miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29008 3' -52.8 NC_006146.1 + 51565 0.66 0.974883
Target:  5'- gAGAUGGgugGGGaGGCGGCGc------ -3'
miRNA:   3'- aUCUACUaa-CCC-CCGCCGCauagaaa -5'
29008 3' -52.8 NC_006146.1 + 169594 0.66 0.972107
Target:  5'- cGGGUGGggccugagGGGGcGCGGCGauUGUCg-- -3'
miRNA:   3'- aUCUACUaa------CCCC-CGCCGC--AUAGaaa -5'
29008 3' -52.8 NC_006146.1 + 167729 0.66 0.972107
Target:  5'- cGGGUGGggccugagGGGGcGCGGCGauUGUCg-- -3'
miRNA:   3'- aUCUACUaa------CCCC-CGCCGC--AUAGaaa -5'
29008 3' -52.8 NC_006146.1 + 59586 0.66 0.962466
Target:  5'- cAGGUGGcgaucUGGaGGGCGGCGUcccccGUCa-- -3'
miRNA:   3'- aUCUACUa----ACC-CCCGCCGCA-----UAGaaa -5'
29008 3' -52.8 NC_006146.1 + 51474 0.67 0.958792
Target:  5'- gAGAUGGgcGGGGGCuGCGgcGUCg-- -3'
miRNA:   3'- aUCUACUaaCCCCCGcCGCa-UAGaaa -5'
29008 3' -52.8 NC_006146.1 + 144361 0.67 0.954878
Target:  5'- gUGGgcGAgguUUGGGGGCGGCuGgggGUCg-- -3'
miRNA:   3'- -AUCuaCU---AACCCCCGCCG-Ca--UAGaaa -5'
29008 3' -52.8 NC_006146.1 + 141283 0.67 0.954878
Target:  5'- gUGGgcGAgguUUGGGGGCGGCuGgggGUCg-- -3'
miRNA:   3'- -AUCuaCU---AACCCCCGCCG-Ca--UAGaaa -5'
29008 3' -52.8 NC_006146.1 + 153595 0.67 0.954878
Target:  5'- gUGGgcGAgguUUGGGGGCGGCuGgggGUCg-- -3'
miRNA:   3'- -AUCuaCU---AACCCCCGCCG-Ca--UAGaaa -5'
29008 3' -52.8 NC_006146.1 + 147439 0.67 0.954878
Target:  5'- gUGGgcGAgguUUGGGGGCGGCuGgggGUCg-- -3'
miRNA:   3'- -AUCuaCU---AACCCCCGCCG-Ca--UAGaaa -5'
29008 3' -52.8 NC_006146.1 + 150517 0.67 0.954878
Target:  5'- gUGGgcGAgguUUGGGGGCGGCuGgggGUCg-- -3'
miRNA:   3'- -AUCuaCU---AACCCCCGCCG-Ca--UAGaaa -5'
29008 3' -52.8 NC_006146.1 + 49472 0.67 0.952413
Target:  5'- gGGAUGGUgaggGccgcggugucggccaGGGGCGGCGUggcAUCUg- -3'
miRNA:   3'- aUCUACUAa---C---------------CCCCGCCGCA---UAGAaa -5'
29008 3' -52.8 NC_006146.1 + 140114 0.67 0.941656
Target:  5'- gAGGUGGUggaagaGGGGGUGGCGg------ -3'
miRNA:   3'- aUCUACUAa-----CCCCCGCCGCauagaaa -5'
29008 3' -52.8 NC_006146.1 + 126001 0.68 0.914528
Target:  5'- gAGGcuUGGgagUGGGGGCGGUGggcuUCUg- -3'
miRNA:   3'- aUCU--ACUa--ACCCCCGCCGCau--AGAaa -5'
29008 3' -52.8 NC_006146.1 + 36963 1.03 0.011733
Target:  5'- uUAGAUGAUUGGGGGCGGCGUAUCUUUu -3'
miRNA:   3'- -AUCUACUAACCCCCGCCGCAUAGAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.