miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29008 5' -50.6 NC_006146.1 + 86885 0.66 0.995163
Target:  5'- --cAGG-UAGCCgCCUCCaaAUCAUCg -3'
miRNA:   3'- auuUUCaAUCGG-GGAGGggUAGUAGa -5'
29008 5' -50.6 NC_006146.1 + 119213 0.66 0.995163
Target:  5'- cGGAGGacgaucAGCCCCcgCCCCGUCGc-- -3'
miRNA:   3'- aUUUUCaa----UCGGGGa-GGGGUAGUaga -5'
29008 5' -50.6 NC_006146.1 + 119334 0.66 0.995163
Target:  5'- -------gGGCCCCUCCCgGcggcgcccagggUCAUCa -3'
miRNA:   3'- auuuucaaUCGGGGAGGGgU------------AGUAGa -5'
29008 5' -50.6 NC_006146.1 + 68153 0.66 0.995163
Target:  5'- gGAAAGgggcuGCCuCCUCCCCGggcaggcgcagCGUCa -3'
miRNA:   3'- aUUUUCaau--CGG-GGAGGGGUa----------GUAGa -5'
29008 5' -50.6 NC_006146.1 + 4769 0.66 0.994361
Target:  5'- -------gAGUCCCUCCCCcucCGUCUc -3'
miRNA:   3'- auuuucaaUCGGGGAGGGGua-GUAGA- -5'
29008 5' -50.6 NC_006146.1 + 126542 0.66 0.993455
Target:  5'- cGGGGGUcUGGCaCCUcgUCCCCAUCAg-- -3'
miRNA:   3'- aUUUUCA-AUCG-GGG--AGGGGUAGUaga -5'
29008 5' -50.6 NC_006146.1 + 78128 0.66 0.993455
Target:  5'- cUGAGAGgcagaGGCCCCUUCaCCuuccUCGUCg -3'
miRNA:   3'- -AUUUUCaa---UCGGGGAGG-GGu---AGUAGa -5'
29008 5' -50.6 NC_006146.1 + 80600 0.66 0.993261
Target:  5'- -------aGGCCCCUCCCCucugccccuuccUCGUCc -3'
miRNA:   3'- auuuucaaUCGGGGAGGGGu-----------AGUAGa -5'
29008 5' -50.6 NC_006146.1 + 116514 0.67 0.988609
Target:  5'- gAGGAGgcGGCaCCa--CCCAUCGUCUg -3'
miRNA:   3'- aUUUUCaaUCG-GGgagGGGUAGUAGA- -5'
29008 5' -50.6 NC_006146.1 + 75321 0.67 0.987045
Target:  5'- -------aGGCCCCgCCCCAgaaaCAUCUa -3'
miRNA:   3'- auuuucaaUCGGGGaGGGGUa---GUAGA- -5'
29008 5' -50.6 NC_006146.1 + 99952 0.67 0.985319
Target:  5'- --------cGCCuCCUCCgCAUCAUCUg -3'
miRNA:   3'- auuuucaauCGG-GGAGGgGUAGUAGA- -5'
29008 5' -50.6 NC_006146.1 + 61506 0.68 0.973958
Target:  5'- --cGAGgaGGCCCCUgccgCCCUGUCAUUc -3'
miRNA:   3'- auuUUCaaUCGGGGA----GGGGUAGUAGa -5'
29008 5' -50.6 NC_006146.1 + 150903 0.68 0.971077
Target:  5'- -cGGAGgaAGCCCUUCCCgG-CGUCg -3'
miRNA:   3'- auUUUCaaUCGGGGAGGGgUaGUAGa -5'
29008 5' -50.6 NC_006146.1 + 67262 0.68 0.967974
Target:  5'- gGAuAGgcgGGCCCCUCCUCcgCGUg- -3'
miRNA:   3'- aUUuUCaa-UCGGGGAGGGGuaGUAga -5'
29008 5' -50.6 NC_006146.1 + 134376 0.69 0.964642
Target:  5'- -cAAGGUgugggcacugUAGCaCCCUCaCCCAcUCAUCUa -3'
miRNA:   3'- auUUUCA----------AUCG-GGGAG-GGGU-AGUAGA- -5'
29008 5' -50.6 NC_006146.1 + 122684 0.69 0.964642
Target:  5'- -------cAGCCCCUCCUUcUCAUCg -3'
miRNA:   3'- auuuucaaUCGGGGAGGGGuAGUAGa -5'
29008 5' -50.6 NC_006146.1 + 32500 0.7 0.939512
Target:  5'- cAAGAaUUAGCUCCUCCuCCA-CAUCUc -3'
miRNA:   3'- aUUUUcAAUCGGGGAGG-GGUaGUAGA- -5'
29008 5' -50.6 NC_006146.1 + 18037 0.71 0.917603
Target:  5'- -------gGGCCaCCUCCaCCGUCAUCg -3'
miRNA:   3'- auuuucaaUCGG-GGAGG-GGUAGUAGa -5'
29008 5' -50.6 NC_006146.1 + 21115 0.71 0.917603
Target:  5'- -------gGGCCaCCUCCaCCGUCAUCg -3'
miRNA:   3'- auuuucaaUCGG-GGAGG-GGUAGUAGa -5'
29008 5' -50.6 NC_006146.1 + 27271 0.71 0.917603
Target:  5'- -------gGGCCaCCUCCaCCGUCAUCg -3'
miRNA:   3'- auuuucaaUCGG-GGAGG-GGUAGUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.