miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29009 5' -55.9 NC_006146.1 + 134805 0.66 0.936547
Target:  5'- aGCGGGucCCCCuUCUAGUcUCCUUgcGGUu -3'
miRNA:   3'- gCGUCCu-GGGGcAGGUCA-AGGAA--UCA- -5'
29009 5' -55.9 NC_006146.1 + 154895 0.66 0.936547
Target:  5'- gGCAGGGCCUCGcCCGGgcugaccgcgUCCg---- -3'
miRNA:   3'- gCGUCCUGGGGCaGGUCa---------AGGaauca -5'
29009 5' -55.9 NC_006146.1 + 52475 0.66 0.936547
Target:  5'- uGCAGGACCUCGgCCAGggaCUg--- -3'
miRNA:   3'- gCGUCCUGGGGCaGGUCaagGAauca -5'
29009 5' -55.9 NC_006146.1 + 56552 0.66 0.920994
Target:  5'- aCGCGGGccaggcCCCCGUCCAccUCCgucagGGg -3'
miRNA:   3'- -GCGUCCu-----GGGGCAGGUcaAGGaa---UCa -5'
29009 5' -55.9 NC_006146.1 + 43755 0.66 0.91534
Target:  5'- gCGCAuGACgCCGUCCAGcUCCa---- -3'
miRNA:   3'- -GCGUcCUGgGGCAGGUCaAGGaauca -5'
29009 5' -55.9 NC_006146.1 + 20521 0.66 0.91534
Target:  5'- gGCGGGccugucagacaGCCCUGUCUAGggCCgggAGa -3'
miRNA:   3'- gCGUCC-----------UGGGGCAGGUCaaGGaa-UCa -5'
29009 5' -55.9 NC_006146.1 + 17443 0.66 0.91534
Target:  5'- gGCGGGccugucagacaGCCCUGUCUAGggCCgggAGa -3'
miRNA:   3'- gCGUCC-----------UGGGGCAGGUCaaGGaa-UCa -5'
29009 5' -55.9 NC_006146.1 + 14365 0.66 0.91534
Target:  5'- gGCGGGccugucagacaGCCCUGUCUAGggCCgggAGa -3'
miRNA:   3'- gCGUCC-----------UGGGGCAGGUCaaGGaa-UCa -5'
29009 5' -55.9 NC_006146.1 + 23599 0.66 0.91534
Target:  5'- gGCGGGccugucagacaGCCCUGUCUAGggCCgggAGa -3'
miRNA:   3'- gCGUCC-----------UGGGGCAGGUCaaGGaa-UCa -5'
29009 5' -55.9 NC_006146.1 + 26677 0.66 0.91534
Target:  5'- gGCGGGccugucagacaGCCCUGUCUAGggCCgggAGa -3'
miRNA:   3'- gCGUCC-----------UGGGGCAGGUCaaGGaa-UCa -5'
29009 5' -55.9 NC_006146.1 + 53472 0.66 0.91534
Target:  5'- gCGCGGGugCCuCGUCgguCAGggCCgggGGUg -3'
miRNA:   3'- -GCGUCCugGG-GCAG---GUCaaGGaa-UCA- -5'
29009 5' -55.9 NC_006146.1 + 129153 0.66 0.909451
Target:  5'- gGCGGGAagcccaCCCGUCuCAGggCCcggUAGa -3'
miRNA:   3'- gCGUCCUg-----GGGCAG-GUCaaGGa--AUCa -5'
29009 5' -55.9 NC_006146.1 + 123637 0.67 0.896978
Target:  5'- uGCAGGACCUCGUCacccGggCCagGGg -3'
miRNA:   3'- gCGUCCUGGGGCAGgu--CaaGGaaUCa -5'
29009 5' -55.9 NC_006146.1 + 148505 0.67 0.890399
Target:  5'- aCGguGGACCCCGgggCCAGgg---UGGa -3'
miRNA:   3'- -GCguCCUGGGGCa--GGUCaaggaAUCa -5'
29009 5' -55.9 NC_006146.1 + 123022 0.67 0.876574
Target:  5'- gCGCccaAGGAaCCCGUCCAcggCCUUGGa -3'
miRNA:   3'- -GCG---UCCUgGGGCAGGUcaaGGAAUCa -5'
29009 5' -55.9 NC_006146.1 + 156371 0.67 0.876574
Target:  5'- -cCAGGGCCCgGUCCAGgcucUCCa---- -3'
miRNA:   3'- gcGUCCUGGGgCAGGUCa---AGGaauca -5'
29009 5' -55.9 NC_006146.1 + 150999 0.68 0.84639
Target:  5'- uGCcGGGCCCUGUCCAGga-CgUAGg -3'
miRNA:   3'- gCGuCCUGGGGCAGGUCaagGaAUCa -5'
29009 5' -55.9 NC_006146.1 + 47535 0.68 0.830124
Target:  5'- uGCGGGGCCCCcggCCAGcgCCagAGc -3'
miRNA:   3'- gCGUCCUGGGGca-GGUCaaGGaaUCa -5'
29009 5' -55.9 NC_006146.1 + 16015 0.69 0.813149
Target:  5'- gGCccuGGCCCCGcCCGGUggCCUUGGg -3'
miRNA:   3'- gCGuc-CUGGGGCaGGUCAa-GGAAUCa -5'
29009 5' -55.9 NC_006146.1 + 12938 0.69 0.813149
Target:  5'- gGCccuGGCCCCGcCCGGUggCCUUGGg -3'
miRNA:   3'- gCGuc-CUGGGGCaGGUCAa-GGAAUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.