miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2901 3' -53.1 NC_001493.1 + 55046 0.66 0.968184
Target:  5'- -gGUGGCGGCgg-GGCGCugaccgugGGCGGCUCg -3'
miRNA:   3'- cgUAUUGCUGggaCUGCG--------UCGCUGAG- -5'
2901 3' -53.1 NC_001493.1 + 101444 0.66 0.968184
Target:  5'- -gAUGACuuCCUUGcGCGCAGCGAUa- -3'
miRNA:   3'- cgUAUUGcuGGGAC-UGCGUCGCUGag -5'
2901 3' -53.1 NC_001493.1 + 70726 0.66 0.968184
Target:  5'- aGCAgGGCGGCCaUGuACGCacugGGCGACg- -3'
miRNA:   3'- -CGUaUUGCUGGgAC-UGCG----UCGCUGag -5'
2901 3' -53.1 NC_001493.1 + 95761 0.66 0.968184
Target:  5'- cGguUGACGAUCCgGaACGguGUGAC-Ca -3'
miRNA:   3'- -CguAUUGCUGGGaC-UGCguCGCUGaG- -5'
2901 3' -53.1 NC_001493.1 + 113624 0.66 0.964935
Target:  5'- uGCuguggAGCGACCCUGu----GUGACUCg -3'
miRNA:   3'- -CGua---UUGCUGGGACugcguCGCUGAG- -5'
2901 3' -53.1 NC_001493.1 + 21942 0.66 0.964935
Target:  5'- aGgGUcAgGGCgCUGGCGCGGaGACUCa -3'
miRNA:   3'- -CgUAuUgCUGgGACUGCGUCgCUGAG- -5'
2901 3' -53.1 NC_001493.1 + 31907 0.66 0.957754
Target:  5'- cGCuccgugAugGAUCgaGACGCGGUGAC-Cg -3'
miRNA:   3'- -CGua----UugCUGGgaCUGCGUCGCUGaG- -5'
2901 3' -53.1 NC_001493.1 + 113047 0.66 0.953811
Target:  5'- gGUAUGAUGACuggguguaugaCCUGGCGCGGaCGAa-- -3'
miRNA:   3'- -CGUAUUGCUG-----------GGACUGCGUC-GCUgag -5'
2901 3' -53.1 NC_001493.1 + 36373 0.67 0.945197
Target:  5'- cGCAcGAUGGCCUcGAcCGCGGUcuuaGGCUCg -3'
miRNA:   3'- -CGUaUUGCUGGGaCU-GCGUCG----CUGAG- -5'
2901 3' -53.1 NC_001493.1 + 30259 0.67 0.94052
Target:  5'- ---aAAUGAUCUUGAC-CAGCGAgUCa -3'
miRNA:   3'- cguaUUGCUGGGACUGcGUCGCUgAG- -5'
2901 3' -53.1 NC_001493.1 + 87007 0.67 0.940039
Target:  5'- gGCGUGACGACCggacccgacggUGGCGCuGCGgguguggugacauACUCg -3'
miRNA:   3'- -CGUAUUGCUGGg----------ACUGCGuCGC-------------UGAG- -5'
2901 3' -53.1 NC_001493.1 + 90702 0.67 0.924983
Target:  5'- aGC-UGAUGAUCCaacuUGAgGUAGCGGCUg -3'
miRNA:   3'- -CGuAUUGCUGGG----ACUgCGUCGCUGAg -5'
2901 3' -53.1 NC_001493.1 + 66241 0.68 0.907175
Target:  5'- aGCAg---GACCUUGGCGCAcGCGAgCUUu -3'
miRNA:   3'- -CGUauugCUGGGACUGCGU-CGCU-GAG- -5'
2901 3' -53.1 NC_001493.1 + 83963 0.68 0.900739
Target:  5'- ---cGACGGCCCUGugGaggaacGCGACa- -3'
miRNA:   3'- cguaUUGCUGGGACugCgu----CGCUGag -5'
2901 3' -53.1 NC_001493.1 + 113024 0.68 0.894057
Target:  5'- gGUGUGAgGGCCUUGAUGUaacucGGgGGCUCu -3'
miRNA:   3'- -CGUAUUgCUGGGACUGCG-----UCgCUGAG- -5'
2901 3' -53.1 NC_001493.1 + 28933 1.13 0.002549
Target:  5'- cGCAUAACGACCCUGACGCAGCGACUCg -3'
miRNA:   3'- -CGUAUUGCUGGGACUGCGUCGCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.