Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2901 | 5' | -58.5 | NC_001493.1 | + | 28897 | 1.06 | 0.002229 |
Target: 5'- aGUGGGGAACUCGUGACGGCCACCGAAa -3' miRNA: 3'- -CACCCCUUGAGCACUGCCGGUGGCUU- -5' |
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2901 | 5' | -58.5 | NC_001493.1 | + | 75736 | 0.76 | 0.232397 |
Target: 5'- -aGGGGggUUCGUGAUGGCaccgcuCACCGGg -3' miRNA: 3'- caCCCCuuGAGCACUGCCG------GUGGCUu -5' |
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2901 | 5' | -58.5 | NC_001493.1 | + | 95851 | 0.74 | 0.323025 |
Target: 5'- -cGGGGuuGCUCGUGACGaGCCACUc-- -3' miRNA: 3'- caCCCCu-UGAGCACUGC-CGGUGGcuu -5' |
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2901 | 5' | -58.5 | NC_001493.1 | + | 27613 | 0.68 | 0.653504 |
Target: 5'- -aGGGGAcccgcgcggGCUCGgGAuCGGCC-CCGAu -3' miRNA: 3'- caCCCCU---------UGAGCaCU-GCCGGuGGCUu -5' |
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2901 | 5' | -58.5 | NC_001493.1 | + | 49011 | 0.68 | 0.66369 |
Target: 5'- gGUGGaGGAACUgGagcggcgcaUGGCGGCCGUCGAu -3' miRNA: 3'- -CACC-CCUUGAgC---------ACUGCCGGUGGCUu -5' |
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2901 | 5' | -58.5 | NC_001493.1 | + | 10811 | 0.68 | 0.673851 |
Target: 5'- -cGGGGAGCUCGcgcgaucgGGCGcGUC-CCGAGa -3' miRNA: 3'- caCCCCUUGAGCa-------CUGC-CGGuGGCUU- -5' |
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2901 | 5' | -58.5 | NC_001493.1 | + | 126365 | 0.68 | 0.673851 |
Target: 5'- -cGGGGAGCUCGcgcgaucgGGCGcGUC-CCGAGa -3' miRNA: 3'- caCCCCUUGAGCa-------CUGC-CGGuGGCUU- -5' |
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2901 | 5' | -58.5 | NC_001493.1 | + | 112499 | 0.66 | 0.743528 |
Target: 5'- -gGGGGAGCcCGUGAggauacggGGgCGCCGAAu -3' miRNA: 3'- caCCCCUUGaGCACUg-------CCgGUGGCUU- -5' |
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2901 | 5' | -58.5 | NC_001493.1 | + | 35742 | 0.66 | 0.753166 |
Target: 5'- -aGaGGAGgUCGUGGCGGCCAUgaCGGc -3' miRNA: 3'- caCcCCUUgAGCACUGCCGGUG--GCUu -5' |
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2901 | 5' | -58.5 | NC_001493.1 | + | 97516 | 0.66 | 0.753167 |
Target: 5'- -cGGGGAucugucCUCGUG-CGGCCugUuGAAg -3' miRNA: 3'- caCCCCUu-----GAGCACuGCCGGugG-CUU- -5' |
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2901 | 5' | -58.5 | NC_001493.1 | + | 81255 | 0.66 | 0.762699 |
Target: 5'- cGUGGGucuGCUCGUGuaacAgGGCCGCCu-- -3' miRNA: 3'- -CACCCcu-UGAGCAC----UgCCGGUGGcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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