miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29010 3' -63.6 NC_006146.1 + 137214 0.66 0.633308
Target:  5'- aCACCCcggggaggaagCCGGGuGGGGGCcUGGGGuccCGGg -3'
miRNA:   3'- -GUGGGa----------GGUCC-CCUCCG-ACCUCc--GCC- -5'
29010 3' -63.6 NC_006146.1 + 117602 0.66 0.633308
Target:  5'- gACuCCggCCAGGGaGAGGaggaGAGGUGGg -3'
miRNA:   3'- gUG-GGa-GGUCCC-CUCCgac-CUCCGCC- -5'
29010 3' -63.6 NC_006146.1 + 115677 0.66 0.633308
Target:  5'- gUACCUga-GGGcGGAGGCa-GAGGCGGc -3'
miRNA:   3'- -GUGGGaggUCC-CCUCCGacCUCCGCC- -5'
29010 3' -63.6 NC_006146.1 + 50812 0.66 0.633308
Target:  5'- aCGgUC-CCAGGGGGGGauccuUGGGGGCu- -3'
miRNA:   3'- -GUgGGaGGUCCCCUCCg----ACCUCCGcc -5'
29010 3' -63.6 NC_006146.1 + 26092 0.66 0.633308
Target:  5'- aCAgCCgggAGGGGAGGCacGGAGGCc- -3'
miRNA:   3'- -GUgGGaggUCCCCUCCGa-CCUCCGcc -5'
29010 3' -63.6 NC_006146.1 + 90178 0.66 0.633308
Target:  5'- gGCCgCggCAGGGGAGGUagugcaGGGGGCa- -3'
miRNA:   3'- gUGG-GagGUCCCCUCCGa-----CCUCCGcc -5'
29010 3' -63.6 NC_006146.1 + 41140 0.66 0.632344
Target:  5'- uCGCgCUCCcuggAGGGacgaggacuggucGGGGUcGGAGGCGGc -3'
miRNA:   3'- -GUGgGAGG----UCCC-------------CUCCGaCCUCCGCC- -5'
29010 3' -63.6 NC_006146.1 + 55759 0.66 0.62367
Target:  5'- cCGCCCggcggcgggCCAGGGGcAGcgaggccaccacGCUGGccagcgacucgGGGCGGu -3'
miRNA:   3'- -GUGGGa--------GGUCCCC-UC------------CGACC-----------UCCGCC- -5'
29010 3' -63.6 NC_006146.1 + 168302 0.66 0.62367
Target:  5'- gCGCCggCCGGGGGcugaggGGGCUcccGaGGGCGGg -3'
miRNA:   3'- -GUGGgaGGUCCCC------UCCGA---CcUCCGCC- -5'
29010 3' -63.6 NC_006146.1 + 169234 0.66 0.62367
Target:  5'- gCGCCggCCGGGGGcugaggGGGCUcccGaGGGCGGg -3'
miRNA:   3'- -GUGGgaGGUCCCC------UCCGA---CcUCCGCC- -5'
29010 3' -63.6 NC_006146.1 + 170165 0.66 0.62367
Target:  5'- gCGCCggCCGGGGGcugaggGGGCUcccGaGGGCGGg -3'
miRNA:   3'- -GUGGgaGGUCCCC------UCCGA---CcUCCGCC- -5'
29010 3' -63.6 NC_006146.1 + 167370 0.66 0.62367
Target:  5'- gCGCCggCCGGGGGcugaggGGGCUcccGaGGGCGGg -3'
miRNA:   3'- -GUGGgaGGUCCCC------UCCGA---CcUCCGCC- -5'
29010 3' -63.6 NC_006146.1 + 141478 0.66 0.62367
Target:  5'- uGgCCUgCGGGGGAcaggguggacggGGCUGGAcucggGGCGa -3'
miRNA:   3'- gUgGGAgGUCCCCU------------CCGACCU-----CCGCc -5'
29010 3' -63.6 NC_006146.1 + 144556 0.66 0.62367
Target:  5'- uGgCCUgCGGGGGAcaggguggacggGGCUGGAcucggGGCGa -3'
miRNA:   3'- gUgGGAgGUCCCCU------------CCGACCU-----CCGCc -5'
29010 3' -63.6 NC_006146.1 + 147634 0.66 0.62367
Target:  5'- uGgCCUgCGGGGGAcaggguggacggGGCUGGAcucggGGCGa -3'
miRNA:   3'- gUgGGAgGUCCCCU------------CCGACCU-----CCGCc -5'
29010 3' -63.6 NC_006146.1 + 150711 0.66 0.62367
Target:  5'- uGgCCUgCGGGGGAcaggguggacggGGCUGGAcucggGGCGa -3'
miRNA:   3'- gUgGGAgGUCCCCU------------CCGACCU-----CCGCc -5'
29010 3' -63.6 NC_006146.1 + 153789 0.66 0.62367
Target:  5'- uGgCCUgCGGGGGAcaggguggacggGGCUGGAcucggGGCGa -3'
miRNA:   3'- gUgGGAgGUCCCCU------------CCGACCU-----CCGCc -5'
29010 3' -63.6 NC_006146.1 + 156867 0.66 0.62367
Target:  5'- uGgCCUgCGGGGGAcaggguggacggGGCUGGAcucggGGCGa -3'
miRNA:   3'- gUgGGAgGUCCCCU------------CCGACCU-----CCGCc -5'
29010 3' -63.6 NC_006146.1 + 32172 0.66 0.614038
Target:  5'- aACCgUaaggaGGGGGGGGUaGGGGGgGGa -3'
miRNA:   3'- gUGGgAgg---UCCCCUCCGaCCUCCgCC- -5'
29010 3' -63.6 NC_006146.1 + 56830 0.66 0.614038
Target:  5'- gGCCC-CCgAGGcGGccucuGGCggcGGGGGCGGc -3'
miRNA:   3'- gUGGGaGG-UCC-CCu----CCGa--CCUCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.