miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29010 5' -50.2 NC_006146.1 + 57791 0.66 0.994938
Target:  5'- aGGCAGCCgCCCUGCauguugCCacgcuUUUCGa -3'
miRNA:   3'- -CUGUCGG-GGGACGaa----GGauuu-AAAGU- -5'
29010 5' -50.2 NC_006146.1 + 152608 0.66 0.994105
Target:  5'- aACAGCCCCCccacggUGCUgaCUAGAUUg-- -3'
miRNA:   3'- cUGUCGGGGG------ACGAagGAUUUAAagu -5'
29010 5' -50.2 NC_006146.1 + 6761 0.66 0.993166
Target:  5'- gGACAGUCCCCgGUUUCUgcucucUUCGg -3'
miRNA:   3'- -CUGUCGGGGGaCGAAGGauuua-AAGU- -5'
29010 5' -50.2 NC_006146.1 + 108944 0.66 0.993166
Target:  5'- aACGGCCCCC-GUgUCCUGAGc---- -3'
miRNA:   3'- cUGUCGGGGGaCGaAGGAUUUaaagu -5'
29010 5' -50.2 NC_006146.1 + 100189 0.66 0.993166
Target:  5'- --aAGCCCCCcGCUccUCCUGAGc---- -3'
miRNA:   3'- cugUCGGGGGaCGA--AGGAUUUaaagu -5'
29010 5' -50.2 NC_006146.1 + 103770 0.67 0.99211
Target:  5'- aGCGGCUCCCgGuCUUCCUcugcAUUUCGc -3'
miRNA:   3'- cUGUCGGGGGaC-GAAGGAuu--UAAAGU- -5'
29010 5' -50.2 NC_006146.1 + 85432 0.67 0.986538
Target:  5'- uGCAGCCCCUUcCUUCUgggGAAUggCAa -3'
miRNA:   3'- cUGUCGGGGGAcGAAGGa--UUUAaaGU- -5'
29010 5' -50.2 NC_006146.1 + 129073 0.68 0.984759
Target:  5'- aGACAGCCCCC-GCgacaUCCggccugUCGu -3'
miRNA:   3'- -CUGUCGGGGGaCGa---AGGauuuaaAGU- -5'
29010 5' -50.2 NC_006146.1 + 103668 0.68 0.975818
Target:  5'- -cCAGCCUCCgugGCUUCCUGu------ -3'
miRNA:   3'- cuGUCGGGGGa--CGAAGGAUuuaaagu -5'
29010 5' -50.2 NC_006146.1 + 106462 0.68 0.975818
Target:  5'- aACAGCCCCuCUGUcUCCUGGc----- -3'
miRNA:   3'- cUGUCGGGG-GACGaAGGAUUuaaagu -5'
29010 5' -50.2 NC_006146.1 + 42425 0.68 0.975818
Target:  5'- cGugGGCCCCCUGg--CCUAcaaguGUUUUAg -3'
miRNA:   3'- -CugUCGGGGGACgaaGGAUu----UAAAGU- -5'
29010 5' -50.2 NC_006146.1 + 21741 0.69 0.966947
Target:  5'- cGGCGGCCaCCCU-CUccgUCCUccaGAAUUUCAc -3'
miRNA:   3'- -CUGUCGG-GGGAcGA---AGGA---UUUAAAGU- -5'
29010 5' -50.2 NC_006146.1 + 117224 0.74 0.806387
Target:  5'- uGCuGCCCCCggGCUUCCUGGAa---- -3'
miRNA:   3'- cUGuCGGGGGa-CGAAGGAUUUaaagu -5'
29010 5' -50.2 NC_006146.1 + 140708 0.76 0.716941
Target:  5'- aGCGGCCCUCUGCUgUCCUugcuuAAUUUUAg -3'
miRNA:   3'- cUGUCGGGGGACGA-AGGAu----UUAAAGU- -5'
29010 5' -50.2 NC_006146.1 + 106342 0.79 0.56753
Target:  5'- --uGGCCCCCUGCUUCCUGc------ -3'
miRNA:   3'- cugUCGGGGGACGAAGGAUuuaaagu -5'
29010 5' -50.2 NC_006146.1 + 43106 1.09 0.009255
Target:  5'- gGACAGCCCCCUGCUUCCUAAAUUUCAa -3'
miRNA:   3'- -CUGUCGGGGGACGAAGGAUUUAAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.