Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29011 | 3' | -61.9 | NC_006146.1 | + | 53540 | 0.67 | 0.643497 |
Target: 5'- gCCgcgaggaC-CGAGGGGCUUCUGGGGg-- -3' miRNA: 3'- -GGaag----GaGCUCCCCGAGGGCCCCaga -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 141258 | 0.68 | 0.619323 |
Target: 5'- cUCUUCCUCGAGgaccccuggacguguGGGCgagguuugggggcggCUgGGGGUCg -3' miRNA: 3'- -GGAAGGAGCUC---------------CCCGa--------------GGgCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 153570 | 0.68 | 0.619323 |
Target: 5'- cUCUUCCUCGAGgaccccuggacguguGGGCgagguuugggggcggCUgGGGGUCg -3' miRNA: 3'- -GGAAGGAGCUC---------------CCCGa--------------GGgCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 150492 | 0.68 | 0.619323 |
Target: 5'- cUCUUCCUCGAGgaccccuggacguguGGGCgagguuugggggcggCUgGGGGUCg -3' miRNA: 3'- -GGAAGGAGCUC---------------CCCGa--------------GGgCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 144336 | 0.68 | 0.619323 |
Target: 5'- cUCUUCCUCGAGgaccccuggacguguGGGCgagguuugggggcggCUgGGGGUCg -3' miRNA: 3'- -GGAAGGAGCUC---------------CCCGa--------------GGgCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 147414 | 0.68 | 0.619323 |
Target: 5'- cUCUUCCUCGAGgaccccuggacguguGGGCgagguuugggggcggCUgGGGGUCg -3' miRNA: 3'- -GGAAGGAGCUC---------------CCCGa--------------GGgCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 47741 | 0.68 | 0.614491 |
Target: 5'- --gUCUUgGAGGGGCUggcCCUGGGGa-- -3' miRNA: 3'- ggaAGGAgCUCCCCGA---GGGCCCCaga -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 156648 | 0.68 | 0.612559 |
Target: 5'- cUCUUCCUCGAGgaccccuggacguguGGGCgagguuuggggcggCUgGGGGUCg -3' miRNA: 3'- -GGAAGGAGCUC---------------CCCGa-------------GGgCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 33309 | 0.68 | 0.585592 |
Target: 5'- gCCgcCgCUCGGuccuGGGGCU-CCGGGGUCc -3' miRNA: 3'- -GGaaG-GAGCU----CCCCGAgGGCCCCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 73183 | 0.68 | 0.553172 |
Target: 5'- aCCUcCCggcauaggucgagCGAGGGGCUCCUGGcGUUc -3' miRNA: 3'- -GGAaGGa------------GCUCCCCGAGGGCCcCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 21332 | 0.69 | 0.54656 |
Target: 5'- cCCUUCCaagagucauucUCgGAGGGGCUgCCGGcgggcuuccugccGGUCa -3' miRNA: 3'- -GGAAGG-----------AG-CUCCCCGAgGGCC-------------CCAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 104961 | 0.69 | 0.538097 |
Target: 5'- aCCUUCCccaaaaaGGccuGGGGCUCCCGaGGGggcUCUg -3' miRNA: 3'- -GGAAGGag-----CU---CCCCGAGGGC-CCC---AGA- -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 151899 | 0.69 | 0.528746 |
Target: 5'- ----aCUCGAGGgGGCcCCCacuGGGGUCUg -3' miRNA: 3'- ggaagGAGCUCC-CCGaGGG---CCCCAGA- -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 132975 | 0.7 | 0.482987 |
Target: 5'- --gUCCUCGGGGGGCgguggagaCCGcGGGUg- -3' miRNA: 3'- ggaAGGAGCUCCCCGag------GGC-CCCAga -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 94690 | 0.71 | 0.439222 |
Target: 5'- ---aCCUCG-GGGGUUCuuGGGGUg- -3' miRNA: 3'- ggaaGGAGCuCCCCGAGggCCCCAga -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 89198 | 0.71 | 0.405891 |
Target: 5'- --aUCCU---GGGGCUCCUGGGGUUUu -3' miRNA: 3'- ggaAGGAgcuCCCCGAGGGCCCCAGA- -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 46879 | 0.71 | 0.39781 |
Target: 5'- -----gUUGAGGGGCUCCUGGGuGUCc -3' miRNA: 3'- ggaaggAGCUCCCCGAGGGCCC-CAGa -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 126787 | 0.72 | 0.389833 |
Target: 5'- cCCcUCCUCGccGGGCagCCGGGGcCUg -3' miRNA: 3'- -GGaAGGAGCucCCCGagGGCCCCaGA- -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 144274 | 0.73 | 0.337003 |
Target: 5'- cCCUaCUUUuAGGGGCUCCUGGGGg-- -3' miRNA: 3'- -GGAaGGAGcUCCCCGAGGGCCCCaga -5' |
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29011 | 3' | -61.9 | NC_006146.1 | + | 153508 | 0.73 | 0.337003 |
Target: 5'- cCCUaCUUUuAGGGGCUCCUGGGGg-- -3' miRNA: 3'- -GGAaGGAGcUCCCCGAGGGCCCCaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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