miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29013 3' -55.9 NC_006146.1 + 73622 0.66 0.929144
Target:  5'- cGAcCGAGGUCCucgaUGUAGAugG-CCagGCGa -3'
miRNA:   3'- -CU-GCUCCAGG----ACGUCUugCaGGa-CGU- -5'
29013 3' -55.9 NC_006146.1 + 43286 0.66 0.929144
Target:  5'- --gGAGGUCCgGCAGGugccuaGCGUCCg--- -3'
miRNA:   3'- cugCUCCAGGaCGUCU------UGCAGGacgu -5'
29013 3' -55.9 NC_006146.1 + 132364 0.66 0.929144
Target:  5'- gGACGGGGUCCUGCGucuccACGgccuaaaCCUGg- -3'
miRNA:   3'- -CUGCUCCAGGACGUcu---UGCa------GGACgu -5'
29013 3' -55.9 NC_006146.1 + 150175 0.66 0.923812
Target:  5'- uGGCGcGGGUCCUcGCAGGcCG-CCaGCAg -3'
miRNA:   3'- -CUGC-UCCAGGA-CGUCUuGCaGGaCGU- -5'
29013 3' -55.9 NC_006146.1 + 96119 0.66 0.906389
Target:  5'- aGugGGGGUUCUGguGcACacucuuUCCUGCGu -3'
miRNA:   3'- -CugCUCCAGGACguCuUGc-----AGGACGU- -5'
29013 3' -55.9 NC_006146.1 + 149199 0.66 0.900111
Target:  5'- --aGAGG-CaCUGCAGGAUGUuggccgcccCCUGCAg -3'
miRNA:   3'- cugCUCCaG-GACGUCUUGCA---------GGACGU- -5'
29013 3' -55.9 NC_006146.1 + 108504 0.67 0.879899
Target:  5'- cGACGAGGUCCUcuuccucgcgaGCuGAACGgccaggggccucUCCgGCGc -3'
miRNA:   3'- -CUGCUCCAGGA-----------CGuCUUGC------------AGGaCGU- -5'
29013 3' -55.9 NC_006146.1 + 138543 0.68 0.82531
Target:  5'- gGGCGAGGUCuCUuacUGGGACcUCCUGCAu -3'
miRNA:   3'- -CUGCUCCAG-GAc--GUCUUGcAGGACGU- -5'
29013 3' -55.9 NC_006146.1 + 170224 0.69 0.80803
Target:  5'- cGCGGGGUCCcgggGCGGGGgGUCggGCGg -3'
miRNA:   3'- cUGCUCCAGGa---CGUCUUgCAGgaCGU- -5'
29013 3' -55.9 NC_006146.1 + 169293 0.69 0.80803
Target:  5'- cGCGGGGUCCcgggGCGGGGgGUCggGCGg -3'
miRNA:   3'- cUGCUCCAGGa---CGUCUUgCAGgaCGU- -5'
29013 3' -55.9 NC_006146.1 + 168361 0.69 0.80803
Target:  5'- cGCGGGGUCCcgggGCGGGGgGUCggGCGg -3'
miRNA:   3'- cUGCUCCAGGa---CGUCUUgCAGgaCGU- -5'
29013 3' -55.9 NC_006146.1 + 167429 0.69 0.80803
Target:  5'- cGCGGGGUCCcgggGCGGGGgGUCggGCGg -3'
miRNA:   3'- cUGCUCCAGGa---CGUCUUgCAGgaCGU- -5'
29013 3' -55.9 NC_006146.1 + 38796 0.69 0.799146
Target:  5'- uGugGAaGUCCUGCGGggUGcacaUCUGCAg -3'
miRNA:   3'- -CugCUcCAGGACGUCuuGCa---GGACGU- -5'
29013 3' -55.9 NC_006146.1 + 123055 0.7 0.752646
Target:  5'- aGACGccGGGUCCa--GGGacGCGUCCUGCGg -3'
miRNA:   3'- -CUGC--UCCAGGacgUCU--UGCAGGACGU- -5'
29013 3' -55.9 NC_006146.1 + 125937 0.72 0.611975
Target:  5'- cACGAGGUCUUGCGGAGCcaggagaagggGUCUgGCGu -3'
miRNA:   3'- cUGCUCCAGGACGUCUUG-----------CAGGaCGU- -5'
29013 3' -55.9 NC_006146.1 + 123611 0.74 0.531383
Target:  5'- --gGAGGagUCCcggcUGCAGGACGUUCUGCAg -3'
miRNA:   3'- cugCUCC--AGG----ACGUCUUGCAGGACGU- -5'
29013 3' -55.9 NC_006146.1 + 40082 0.76 0.39322
Target:  5'- cGGCgGAGGgCCUGCAGcGCGUgCUGCAg -3'
miRNA:   3'- -CUG-CUCCaGGACGUCuUGCAgGACGU- -5'
29013 3' -55.9 NC_006146.1 + 47276 1.08 0.003447
Target:  5'- uGACGAGGUCCUGCAGAACGUCCUGCAg -3'
miRNA:   3'- -CUGCUCCAGGACGUCUUGCAGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.