miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29013 5' -60.3 NC_006146.1 + 44560 0.66 0.800544
Target:  5'- ---gCCGGGgCUCC-GGGUGGcUGGCg -3'
miRNA:   3'- ggagGGCCCgGAGGaCCUACU-ACCGg -5'
29013 5' -60.3 NC_006146.1 + 124212 0.66 0.800544
Target:  5'- aCUCuuaCUGGGaCUCCUGGuccgacGUGGaGGCCa -3'
miRNA:   3'- gGAG---GGCCCgGAGGACC------UACUaCCGG- -5'
29013 5' -60.3 NC_006146.1 + 14539 0.66 0.800544
Target:  5'- gCCUggaCCGGGC--CCUGGAgcUGcugGGCCg -3'
miRNA:   3'- -GGAg--GGCCCGgaGGACCU--ACua-CCGG- -5'
29013 5' -60.3 NC_006146.1 + 44589 0.66 0.800544
Target:  5'- gCC-CCCGGGCCgcugCCuuucccguUGcAUGAuagaaUGGCCa -3'
miRNA:   3'- -GGaGGGCCCGGa---GG--------ACcUACU-----ACCGG- -5'
29013 5' -60.3 NC_006146.1 + 1490 0.66 0.800544
Target:  5'- gCCUCCUGaccauggcagccGGCCUCguUUGGGUGGUG-CUg -3'
miRNA:   3'- -GGAGGGC------------CCGGAG--GACCUACUACcGG- -5'
29013 5' -60.3 NC_006146.1 + 100269 0.66 0.800544
Target:  5'- gCUCCaUGGaGCCUCCUagcGGggGcUGGCa -3'
miRNA:   3'- gGAGG-GCC-CGGAGGA---CCuaCuACCGg -5'
29013 5' -60.3 NC_006146.1 + 66276 0.66 0.800544
Target:  5'- gUCUCgCGGGuCCUCCUGaucaGAUagucgcGGCCa -3'
miRNA:   3'- -GGAGgGCCC-GGAGGACcua-CUA------CCGG- -5'
29013 5' -60.3 NC_006146.1 + 69257 0.66 0.791924
Target:  5'- gCCaggUCCGGGuCCUCCUcgaaGAUGcagcUGGCCc -3'
miRNA:   3'- -GGa--GGGCCC-GGAGGAc---CUACu---ACCGG- -5'
29013 5' -60.3 NC_006146.1 + 110013 0.66 0.791924
Target:  5'- gCCUCa-GGGCUccgUCCUGaucaaaGAUGGCCu -3'
miRNA:   3'- -GGAGggCCCGG---AGGACcua---CUACCGG- -5'
29013 5' -60.3 NC_006146.1 + 41845 0.66 0.791924
Target:  5'- --aCCCGGGCCguggCCaGGGgcuaccggGGCCu -3'
miRNA:   3'- ggaGGGCCCGGa---GGaCCUacua----CCGG- -5'
29013 5' -60.3 NC_006146.1 + 6401 0.66 0.791924
Target:  5'- uCCUCuuGGGCCa--UGGGgucccuuUGGCCc -3'
miRNA:   3'- -GGAGggCCCGGaggACCUacu----ACCGG- -5'
29013 5' -60.3 NC_006146.1 + 30038 0.66 0.791924
Target:  5'- aCCUCCCucGGCUUCCacuuUGGGUGAccuaGCUg -3'
miRNA:   3'- -GGAGGGc-CCGGAGG----ACCUACUac--CGG- -5'
29013 5' -60.3 NC_006146.1 + 158830 0.66 0.786688
Target:  5'- gCCggggCCCGGcCCUCgcaaagcgagcacaUGGGgcUGGUGGCCg -3'
miRNA:   3'- -GGa---GGGCCcGGAGg-------------ACCU--ACUACCGG- -5'
29013 5' -60.3 NC_006146.1 + 116022 0.66 0.783172
Target:  5'- uCCUCCgGccgguuaaaGGCCUCCacggcccgcugcUGGG-GAUGGCg -3'
miRNA:   3'- -GGAGGgC---------CCGGAGG------------ACCUaCUACCGg -5'
29013 5' -60.3 NC_006146.1 + 38452 0.66 0.783172
Target:  5'- -aUCCCcuGCCUCCgGGGUGAcggGuGCCa -3'
miRNA:   3'- ggAGGGccCGGAGGaCCUACUa--C-CGG- -5'
29013 5' -60.3 NC_006146.1 + 65314 0.66 0.783172
Target:  5'- gCCUCuuGcGGCCUCUcgaguaUGG-UGAggguccGGCCu -3'
miRNA:   3'- -GGAGggC-CCGGAGG------ACCuACUa-----CCGG- -5'
29013 5' -60.3 NC_006146.1 + 145140 0.66 0.783172
Target:  5'- gCCaCCCGGGCUgCCgGGGUcccuccGGcUGGCCu -3'
miRNA:   3'- -GGaGGGCCCGGaGGaCCUA------CU-ACCGG- -5'
29013 5' -60.3 NC_006146.1 + 157452 0.66 0.783172
Target:  5'- gCCaCCCGGGCUgCCgGGGUcccuccGGcUGGCCu -3'
miRNA:   3'- -GGaGGGCCCGGaGGaCCUA------CU-ACCGG- -5'
29013 5' -60.3 NC_006146.1 + 154374 0.66 0.783172
Target:  5'- gCCaCCCGGGCUgCCgGGGUcccuccGGcUGGCCu -3'
miRNA:   3'- -GGaGGGCCCGGaGGaCCUA------CU-ACCGG- -5'
29013 5' -60.3 NC_006146.1 + 148218 0.66 0.783172
Target:  5'- gCCaCCCGGGCUgCCgGGGUcccuccGGcUGGCCu -3'
miRNA:   3'- -GGaGGGCCCGGaGGaCCUA------CU-ACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.