miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 3' -56.4 NC_006146.1 + 86363 0.66 0.885697
Target:  5'- cGUCaUCcgUCAGCUgGCCGGUCUuGGa- -3'
miRNA:   3'- uCGG-AGa-AGUCGAgCGGCUAGA-CCag -5'
29014 3' -56.4 NC_006146.1 + 28599 0.66 0.878692
Target:  5'- cGCCUCcucgggUUCAGC-CGCUGG-CUGGcUCu -3'
miRNA:   3'- uCGGAG------AAGUCGaGCGGCUaGACC-AG- -5'
29014 3' -56.4 NC_006146.1 + 25521 0.66 0.878692
Target:  5'- cGCCUCcucgggUUCAGC-CGCUGG-CUGGcUCu -3'
miRNA:   3'- uCGGAG------AAGUCGaGCGGCUaGACC-AG- -5'
29014 3' -56.4 NC_006146.1 + 22443 0.66 0.878692
Target:  5'- cGCCUCcucgggUUCAGC-CGCUGG-CUGGcUCu -3'
miRNA:   3'- uCGGAG------AAGUCGaGCGGCUaGACC-AG- -5'
29014 3' -56.4 NC_006146.1 + 19365 0.66 0.878692
Target:  5'- cGCCUCcucgggUUCAGC-CGCUGG-CUGGcUCu -3'
miRNA:   3'- uCGGAG------AAGUCGaGCGGCUaGACC-AG- -5'
29014 3' -56.4 NC_006146.1 + 16287 0.66 0.878692
Target:  5'- cGCCUCcucgggUUCAGC-CGCUGG-CUGGcUCu -3'
miRNA:   3'- uCGGAG------AAGUCGaGCGGCUaGACC-AG- -5'
29014 3' -56.4 NC_006146.1 + 13209 0.66 0.878692
Target:  5'- cGCCUCcucgggUUCAGC-CGCUGG-CUGGcUCu -3'
miRNA:   3'- uCGGAG------AAGUCGaGCGGCUaGACC-AG- -5'
29014 3' -56.4 NC_006146.1 + 48896 0.67 0.871466
Target:  5'- cGCCUCUUCuGuCUCaGCUGAUCguuguuGUCa -3'
miRNA:   3'- uCGGAGAAGuC-GAG-CGGCUAGac----CAG- -5'
29014 3' -56.4 NC_006146.1 + 80259 0.67 0.864026
Target:  5'- gGGCCUUcUCGGCUCa--GGUCUGGa- -3'
miRNA:   3'- -UCGGAGaAGUCGAGcggCUAGACCag -5'
29014 3' -56.4 NC_006146.1 + 162445 0.67 0.832242
Target:  5'- aAGCUauccaucugUUUUCAGCUCGCCcccGAgcucucCUGGUCc -3'
miRNA:   3'- -UCGG---------AGAAGUCGAGCGG---CUa-----GACCAG- -5'
29014 3' -56.4 NC_006146.1 + 40517 0.68 0.815231
Target:  5'- uGCCUCggaGGCUUGCUGuccaggUUGGUCu -3'
miRNA:   3'- uCGGAGaagUCGAGCGGCua----GACCAG- -5'
29014 3' -56.4 NC_006146.1 + 61261 0.68 0.806472
Target:  5'- -cCCUCUUCAGCga-UCGggCUGGUCu -3'
miRNA:   3'- ucGGAGAAGUCGagcGGCuaGACCAG- -5'
29014 3' -56.4 NC_006146.1 + 76544 0.68 0.784823
Target:  5'- cGCCUCggcaacuacucgCAGUUCGCCGAccaggacaUGGUCc -3'
miRNA:   3'- uCGGAGaa----------GUCGAGCGGCUag------ACCAG- -5'
29014 3' -56.4 NC_006146.1 + 133033 0.69 0.731454
Target:  5'- cGUCUCUaCuGCUCGCCGGguacgUCUGG-Cg -3'
miRNA:   3'- uCGGAGAaGuCGAGCGGCU-----AGACCaG- -5'
29014 3' -56.4 NC_006146.1 + 62337 0.7 0.711657
Target:  5'- uGCCg--UCAGCUCGCC--UCUGGg- -3'
miRNA:   3'- uCGGagaAGUCGAGCGGcuAGACCag -5'
29014 3' -56.4 NC_006146.1 + 128301 0.7 0.681476
Target:  5'- aGGCUUCggUCAGCUCucucuuucCCGggCUGGUCc -3'
miRNA:   3'- -UCGGAGa-AGUCGAGc-------GGCuaGACCAG- -5'
29014 3' -56.4 NC_006146.1 + 74167 0.73 0.539342
Target:  5'- aGGCCguuaaUCUggUCAaacuGCUCGuuGAUCUGGUCc -3'
miRNA:   3'- -UCGG-----AGA--AGU----CGAGCggCUAGACCAG- -5'
29014 3' -56.4 NC_006146.1 + 40983 0.73 0.500176
Target:  5'- uGUCUCagCAGCUgGCCcuGUCUGGUCa -3'
miRNA:   3'- uCGGAGaaGUCGAgCGGc-UAGACCAG- -5'
29014 3' -56.4 NC_006146.1 + 47478 1.09 0.002516
Target:  5'- gAGCCUCUUCAGCUCGCCGAUCUGGUCu -3'
miRNA:   3'- -UCGGAGAAGUCGAGCGGCUAGACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.