miRNA display CGI


Results 61 - 80 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 92155 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 157330 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 154252 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 151174 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 14132 0.67 0.789566
Target:  5'- gGCGGCCua---CAGCCAGGUguacGCGcuGGc -3'
miRNA:   3'- -CGCCGGucaagGUCGGUCCAa---CGC--CC- -5'
29014 5' -58.6 NC_006146.1 + 145018 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92006 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92036 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92125 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 56489 0.68 0.753111
Target:  5'- aGCGGCauCAGcgcgCgCAGUCGGGccGCGGGg -3'
miRNA:   3'- -CGCCG--GUCaa--G-GUCGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 59761 0.68 0.743725
Target:  5'- -aGGCCAGccgcCCGGCCaccuggGGGUUGaGGGu -3'
miRNA:   3'- cgCCGGUCaa--GGUCGG------UCCAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 117575 0.68 0.72756
Target:  5'- cGCGGCCgccgggccuccucGGgcucggacUCCGGCCAGGgagaggaggagagGUGGGa -3'
miRNA:   3'- -CGCCGG-------------UCa-------AGGUCGGUCCaa-----------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 7344 0.68 0.705341
Target:  5'- cCGGCuUAGUUCCAGUC-GGUagucaUGCGGu -3'
miRNA:   3'- cGCCG-GUCAAGGUCGGuCCA-----ACGCCc -5'
29014 5' -58.6 NC_006146.1 + 168235 0.68 0.753111
Target:  5'- aGgGGCCGGcgCCuGCagggGGGgccgGCGGGg -3'
miRNA:   3'- -CgCCGGUCaaGGuCGg---UCCaa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92089 0.68 0.724684
Target:  5'- gGCGGCCcggccuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- -CGCCGG------UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 43484 0.68 0.715046
Target:  5'- gGCGGCC-GUUgacaCCGGCUccGGcgGCGGGg -3'
miRNA:   3'- -CGCCGGuCAA----GGUCGGu-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 51204 0.68 0.705341
Target:  5'- cGUGGUaCAGggcaUCCacgaGGCCGGGgugGCGGGu -3'
miRNA:   3'- -CGCCG-GUCa---AGG----UCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 127070 0.68 0.724684
Target:  5'- gGCGGCgCGGgaagCCgaaagGGCCAGGgcggagcgGUGGGa -3'
miRNA:   3'- -CGCCG-GUCaa--GG-----UCGGUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 127584 0.68 0.705341
Target:  5'- gGCGGCCgAGgccgcgCCGGCCGGGUgagaGUGa- -3'
miRNA:   3'- -CGCCGG-UCaa----GGUCGGUCCAa---CGCcc -5'
29014 5' -58.6 NC_006146.1 + 167303 0.68 0.753111
Target:  5'- aGgGGCCGGcgCCuGCagggGGGgccgGCGGGg -3'
miRNA:   3'- -CgCCGGUCaaGGuCGg---UCCaa--CGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.