miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 127584 0.68 0.705341
Target:  5'- gGCGGCCgAGgccgcgCCGGCCGGGUgagaGUGa- -3'
miRNA:   3'- -CGCCGG-UCaa----GGUCGGUCCAa---CGCcc -5'
29014 5' -58.6 NC_006146.1 + 45416 0.68 0.743725
Target:  5'- -gGGCCAGcgcgaggccCCGGCCGGGUUgaaGUGGa -3'
miRNA:   3'- cgCCGGUCaa-------GGUCGGUCCAA---CGCCc -5'
29014 5' -58.6 NC_006146.1 + 56489 0.68 0.753111
Target:  5'- aGCGGCauCAGcgcgCgCAGUCGGGccGCGGGg -3'
miRNA:   3'- -CGCCG--GUCaa--G-GUCGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 127070 0.68 0.724684
Target:  5'- gGCGGCgCGGgaagCCgaaagGGCCAGGgcggagcgGUGGGa -3'
miRNA:   3'- -CGCCG-GUCaa--GG-----UCGGUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 48601 0.69 0.665031
Target:  5'- -aGGCCAgaaggguGUUCCAGUCGucgggugccguGGggGCGGGc -3'
miRNA:   3'- cgCCGGU-------CAAGGUCGGU-----------CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 106319 0.69 0.674923
Target:  5'- -gGGCCAGUUCCAGacacugcCCAuaccUGCGGGc -3'
miRNA:   3'- cgCCGGUCAAGGUC-------GGUcca-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 34058 0.69 0.67591
Target:  5'- cCGGCCGGgggUCCcguggcacggGGCCGGGgguccCGGGg -3'
miRNA:   3'- cGCCGGUCa--AGG----------UCGGUCCaac--GCCC- -5'
29014 5' -58.6 NC_006146.1 + 67212 0.69 0.67591
Target:  5'- cGUGGCCGGUcgccuggCCGGCCAGGcacaGGa -3'
miRNA:   3'- -CGCCGGUCAa------GGUCGGUCCaacgCCc -5'
29014 5' -58.6 NC_006146.1 + 51604 0.69 0.666021
Target:  5'- -aGGCCGGUUgcgucgggacagCCGGCUgAGGUUGaGGGa -3'
miRNA:   3'- cgCCGGUCAA------------GGUCGG-UCCAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 43520 0.69 0.695578
Target:  5'- -gGGCCAGgcugCCGGCCaccaucagugGGGUguccGUGGGu -3'
miRNA:   3'- cgCCGGUCaa--GGUCGG----------UCCAa---CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 156688 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 69660 0.69 0.685765
Target:  5'- cGCGGuCCuccUCCAGCUGGGggGUGGc -3'
miRNA:   3'- -CGCC-GGucaAGGUCGGUCCaaCGCCc -5'
29014 5' -58.6 NC_006146.1 + 45046 0.69 0.689696
Target:  5'- -aGGCCGGggCCGGCUcccuaggggcggcugAGGUgccucGUGGGg -3'
miRNA:   3'- cgCCGGUCaaGGUCGG---------------UCCAa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 99669 0.69 0.686748
Target:  5'- -aGGCCccaggAGUUgaCCAGCCAGGacucgaagcccccgGCGGGa -3'
miRNA:   3'- cgCCGG-----UCAA--GGUCGGUCCaa------------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 161417 0.69 0.656107
Target:  5'- -aGGCCuGUgCCAGgCGGGUguggccccGCGGGa -3'
miRNA:   3'- cgCCGGuCAaGGUCgGUCCAa-------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 141299 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 147455 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 144377 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 150533 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 153611 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.