miRNA display CGI


Results 101 - 120 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 150533 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 153611 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 156688 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 43520 0.69 0.695578
Target:  5'- -gGGCCAGgcugCCGGCCaccaucagugGGGUguccGUGGGu -3'
miRNA:   3'- cgCCGGUCaa--GGUCGG----------UCCAa---CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 52990 0.69 0.695578
Target:  5'- gGCGGaCCug--CCGGCCGuGGccGCGGGg -3'
miRNA:   3'- -CGCC-GGucaaGGUCGGU-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 167363 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 169227 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 117247 0.7 0.606411
Target:  5'- aGCGGCCGGggCCAGggGGGUcgGCaGGu -3'
miRNA:   3'- -CGCCGGUCaaGGUCggUCCAa-CGcCC- -5'
29014 5' -58.6 NC_006146.1 + 170158 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 168295 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 94380 0.7 0.606411
Target:  5'- gGCGcGCgUAGUUCUucuggAGCCAGG-UGUGGGc -3'
miRNA:   3'- -CGC-CG-GUCAAGG-----UCGGUCCaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 76255 0.7 0.596498
Target:  5'- aUGGCCAGaaUguGUCAGG-UGCGGGu -3'
miRNA:   3'- cGCCGGUCaaGguCGGUCCaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 15309 0.71 0.576753
Target:  5'- aGgGGCCGGaggCCAGCCccGGUgugccccugGCGGGc -3'
miRNA:   3'- -CgCCGGUCaa-GGUCGGu-CCAa--------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 170039 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 169107 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 168175 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 167243 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 74253 0.71 0.570857
Target:  5'- cGCGGCCGucUCCccgggcuggccaaagAGCC-GGUUGCGGu -3'
miRNA:   3'- -CGCCGGUcaAGG---------------UCGGuCCAACGCCc -5'
29014 5' -58.6 NC_006146.1 + 169279 0.72 0.528143
Target:  5'- cUGGCgGGggCCAGCgCGGGgucccgggGCGGGg -3'
miRNA:   3'- cGCCGgUCaaGGUCG-GUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 170210 0.72 0.528143
Target:  5'- cUGGCgGGggCCAGCgCGGGgucccgggGCGGGg -3'
miRNA:   3'- cGCCGgUCaaGGUCG-GUCCaa------CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.