miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 34058 0.69 0.67591
Target:  5'- cCGGCCGGgggUCCcguggcacggGGCCGGGgguccCGGGg -3'
miRNA:   3'- cGCCGGUCa--AGG----------UCGGUCCaac--GCCC- -5'
29014 5' -58.6 NC_006146.1 + 67212 0.69 0.67591
Target:  5'- cGUGGCCGGUcgccuggCCGGCCAGGcacaGGa -3'
miRNA:   3'- -CGCCGGUCAa------GGUCGGUCCaacgCCc -5'
29014 5' -58.6 NC_006146.1 + 48601 0.69 0.665031
Target:  5'- -aGGCCAgaaggguGUUCCAGUCGucgggugccguGGggGCGGGc -3'
miRNA:   3'- cgCCGGU-------CAAGGUCGGU-----------CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 129351 0.69 0.67591
Target:  5'- aGCGGCCGGUUCucgagCAGCCucAGGaggagcccGCGGa -3'
miRNA:   3'- -CGCCGGUCAAG-----GUCGG--UCCaa------CGCCc -5'
29014 5' -58.6 NC_006146.1 + 161417 0.69 0.656107
Target:  5'- -aGGCCuGUgCCAGgCGGGUguggccccGCGGGa -3'
miRNA:   3'- cgCCGGuCAaGGUCgGUCCAa-------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 122630 0.69 0.656107
Target:  5'- -aGGCCGGggCCcucuuucgcGCCAGGacggcgGCGGGg -3'
miRNA:   3'- cgCCGGUCaaGGu--------CGGUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 108899 0.69 0.646174
Target:  5'- cGCGGCCAGcgagUCAGCagcgaccgagCAGGUgacGUGGGc -3'
miRNA:   3'- -CGCCGGUCaa--GGUCG----------GUCCAa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 141299 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 106319 0.69 0.674923
Target:  5'- -gGGCCAGUUCCAGacacugcCCAuaccUGCGGGc -3'
miRNA:   3'- cgCCGGUCAAGGUC-------GGUcca-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 99669 0.69 0.686748
Target:  5'- -aGGCCccaggAGUUgaCCAGCCAGGacucgaagcccccgGCGGGa -3'
miRNA:   3'- cgCCGG-----UCAA--GGUCGGUCCaa------------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 45046 0.69 0.689696
Target:  5'- -aGGCCGGggCCGGCUcccuaggggcggcugAGGUgccucGUGGGg -3'
miRNA:   3'- cgCCGGUCaaGGUCGG---------------UCCAa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 127584 0.68 0.705341
Target:  5'- gGCGGCCgAGgccgcgCCGGCCGGGUgagaGUGa- -3'
miRNA:   3'- -CGCCGG-UCaa----GGUCGGUCCAa---CGCcc -5'
29014 5' -58.6 NC_006146.1 + 51204 0.68 0.705341
Target:  5'- cGUGGUaCAGggcaUCCacgaGGCCGGGgugGCGGGu -3'
miRNA:   3'- -CGCCG-GUCa---AGG----UCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92089 0.68 0.724684
Target:  5'- gGCGGCCcggccuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- -CGCCGG------UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 117575 0.68 0.72756
Target:  5'- cGCGGCCgccgggccuccucGGgcucggacUCCGGCCAGGgagaggaggagagGUGGGa -3'
miRNA:   3'- -CGCCGG-------------UCa-------AGGUCGGUCCaa-----------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 59761 0.68 0.743725
Target:  5'- -aGGCCAGccgcCCGGCCaccuggGGGUUGaGGGu -3'
miRNA:   3'- cgCCGGUCaa--GGUCGG------UCCAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 7344 0.68 0.705341
Target:  5'- cCGGCuUAGUUCCAGUC-GGUagucaUGCGGu -3'
miRNA:   3'- cGCCG-GUCAAGGUCGGuCCA-----ACGCCc -5'
29014 5' -58.6 NC_006146.1 + 43484 0.68 0.715046
Target:  5'- gGCGGCC-GUUgacaCCGGCUccGGcgGCGGGg -3'
miRNA:   3'- -CGCCGGuCAA----GGUCGGu-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 112271 0.68 0.724684
Target:  5'- gGUGGCauuGGUUCCAGUaguGGGggGCuGGGu -3'
miRNA:   3'- -CGCCGg--UCAAGGUCGg--UCCaaCG-CCC- -5'
29014 5' -58.6 NC_006146.1 + 127070 0.68 0.724684
Target:  5'- gGCGGCgCGGgaagCCgaaagGGCCAGGgcggagcgGUGGGa -3'
miRNA:   3'- -CGCCG-GUCaa--GG-----UCGGUCCaa------CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.