miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 45416 0.68 0.743725
Target:  5'- -gGGCCAGcgcgaggccCCGGCCGGGUUgaaGUGGa -3'
miRNA:   3'- cgCCGGUCaa-------GGUCGGUCCAA---CGCCc -5'
29014 5' -58.6 NC_006146.1 + 168235 0.68 0.753111
Target:  5'- aGgGGCCGGcgCCuGCagggGGGgccgGCGGGg -3'
miRNA:   3'- -CgCCGGUCaaGGuCGg---UCCaa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 169167 0.68 0.753111
Target:  5'- aGgGGCCGGcgCCuGCagggGGGgccgGCGGGg -3'
miRNA:   3'- -CgCCGGUCaaGGuCGg---UCCaa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 59761 0.68 0.743725
Target:  5'- -aGGCCAGccgcCCGGCCaccuggGGGUUGaGGGu -3'
miRNA:   3'- cgCCGGUCaa--GGUCGG------UCCAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 51204 0.68 0.705341
Target:  5'- cGUGGUaCAGggcaUCCacgaGGCCGGGgugGCGGGu -3'
miRNA:   3'- -CGCCG-GUCa---AGG----UCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92089 0.68 0.724684
Target:  5'- gGCGGCCcggccuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- -CGCCGG------UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 150688 0.67 0.767917
Target:  5'- aGUGGCCAGggggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 103695 0.67 0.789566
Target:  5'- cCGGCCAGgcgaCCGGCCAcGGccaGUGGa -3'
miRNA:   3'- cGCCGGUCaa--GGUCGGU-CCaa-CGCCc -5'
29014 5' -58.6 NC_006146.1 + 92305 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92275 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92245 0.67 0.789566
Target:  5'- cCGGCCuGUggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGGuCAa-GGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 13395 0.67 0.771574
Target:  5'- cGCGGCCAcGgacugccUCAGCCAGGUcUGCa-- -3'
miRNA:   3'- -CGCCGGU-Caa-----GGUCGGUCCA-ACGccc -5'
29014 5' -58.6 NC_006146.1 + 104408 0.67 0.795741
Target:  5'- cCGGCCGGUgcaUCCGGCUgccgcauaccuacaAGGUggacagggGCGGc -3'
miRNA:   3'- cGCCGGUCA---AGGUCGG--------------UCCAa-------CGCCc -5'
29014 5' -58.6 NC_006146.1 + 39833 0.67 0.798366
Target:  5'- gGCGGCCucggccgcacAGUgggCCGGCgGGGgcugugUGCccGGGg -3'
miRNA:   3'- -CGCCGG----------UCAa--GGUCGgUCCa-----ACG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 126176 0.67 0.796617
Target:  5'- cGCGGCCAccgcaucaggCCGGCCA----GCGGGg -3'
miRNA:   3'- -CGCCGGUcaa-------GGUCGGUccaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92215 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 27628 0.67 0.771574
Target:  5'- gGUGGCCagggaAGUUCCgGGCCAGcGUcacCGGGc -3'
miRNA:   3'- -CGCCGG-----UCAAGG-UCGGUC-CAac-GCCC- -5'
29014 5' -58.6 NC_006146.1 + 139064 0.67 0.771574
Target:  5'- gGCGGCCAccauaCgGGCCcuGGUggcGCGGGg -3'
miRNA:   3'- -CGCCGGUcaa--GgUCGGu-CCAa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 123510 0.67 0.771574
Target:  5'- cUGGCCacGGUcgaccCCAGgCGGGUcGCGGGu -3'
miRNA:   3'- cGCCGG--UCAa----GGUCgGUCCAaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 124131 0.67 0.789566
Target:  5'- cCGGCCAGccaUCCGcCCGGGgu-CGGGa -3'
miRNA:   3'- cGCCGGUCa--AGGUcGGUCCaacGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.