Results 81 - 100 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29014 | 5' | -58.6 | NC_006146.1 | + | 148096 | 0.67 | 0.775212 |
Target: 5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3' miRNA: 3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 145018 | 0.67 | 0.775212 |
Target: 5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3' miRNA: 3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 141940 | 0.67 | 0.775212 |
Target: 5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3' miRNA: 3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 73484 | 0.67 | 0.771574 |
Target: 5'- gGCGGUUAacUUCCAGCacCAGGc-GCGGGg -3' miRNA: 3'- -CGCCGGUc-AAGGUCG--GUCCaaCGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 154252 | 0.67 | 0.775212 |
Target: 5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3' miRNA: 3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 27628 | 0.67 | 0.771574 |
Target: 5'- gGUGGCCagggaAGUUCCgGGCCAGcGUcacCGGGc -3' miRNA: 3'- -CGCCGG-----UCAAGG-UCGGUC-CAac-GCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 13395 | 0.67 | 0.771574 |
Target: 5'- cGCGGCCAcGgacugccUCAGCCAGGUcUGCa-- -3' miRNA: 3'- -CGCCGGU-Caa-----GGUCGGUCCA-ACGccc -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 123510 | 0.67 | 0.771574 |
Target: 5'- cUGGCCacGGUcgaccCCAGgCGGGUcGCGGGu -3' miRNA: 3'- cGCCGG--UCAa----GGUCgGUCCAaCGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 151174 | 0.67 | 0.775212 |
Target: 5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3' miRNA: 3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 157330 | 0.67 | 0.775212 |
Target: 5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3' miRNA: 3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 14132 | 0.67 | 0.789566 |
Target: 5'- gGCGGCCua---CAGCCAGGUguacGCGcuGGc -3' miRNA: 3'- -CGCCGGucaagGUCGGUCCAa---CGC--CC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 92275 | 0.67 | 0.789566 |
Target: 5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3' miRNA: 3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 92245 | 0.67 | 0.789566 |
Target: 5'- cCGGCCuGUggCUgcuGCUGGGggGCGGGc -3' miRNA: 3'- cGCCGGuCAa-GGu--CGGUCCaaCGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 92215 | 0.67 | 0.789566 |
Target: 5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3' miRNA: 3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 92185 | 0.67 | 0.789566 |
Target: 5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3' miRNA: 3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 92155 | 0.67 | 0.789566 |
Target: 5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3' miRNA: 3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 92125 | 0.67 | 0.789566 |
Target: 5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3' miRNA: 3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 92036 | 0.67 | 0.789566 |
Target: 5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3' miRNA: 3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 92006 | 0.67 | 0.789566 |
Target: 5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3' miRNA: 3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 150688 | 0.67 | 0.767917 |
Target: 5'- aGUGGCCAGggggacggagGGCCuGGccUGCGGGg -3' miRNA: 3'- -CGCCGGUCaagg------UCGGuCCa-ACGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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