miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 45416 0.68 0.743725
Target:  5'- -gGGCCAGcgcgaggccCCGGCCGGGUUgaaGUGGa -3'
miRNA:   3'- cgCCGGUCaa-------GGUCGGUCCAA---CGCCc -5'
29014 5' -58.6 NC_006146.1 + 168235 0.68 0.753111
Target:  5'- aGgGGCCGGcgCCuGCagggGGGgccgGCGGGg -3'
miRNA:   3'- -CgCCGGUCaaGGuCGg---UCCaa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 56489 0.68 0.753111
Target:  5'- aGCGGCauCAGcgcgCgCAGUCGGGccGCGGGg -3'
miRNA:   3'- -CGCCG--GUCaa--G-GUCGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 167303 0.68 0.753111
Target:  5'- aGgGGCCGGcgCCuGCagggGGGgccgGCGGGg -3'
miRNA:   3'- -CgCCGGUCaaGGuCGg---UCCaa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 169167 0.68 0.753111
Target:  5'- aGgGGCCGGcgCCuGCagggGGGgccgGCGGGg -3'
miRNA:   3'- -CgCCGGUCaaGGuCGg---UCCaa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 53028 0.68 0.756838
Target:  5'- cGCGGCUGGccgCGGCCgccgccgagagguaaGGGggGCGGGu -3'
miRNA:   3'- -CGCCGGUCaagGUCGG---------------UCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 150688 0.67 0.767917
Target:  5'- aGUGGCCAGggggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 113750 0.67 0.771574
Target:  5'- aGCGGCCcGUcCCGuCCGGGgcuCGGGg -3'
miRNA:   3'- -CGCCGGuCAaGGUcGGUCCaacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 45916 0.67 0.771574
Target:  5'- cCGGCCGGUgaCCGuGCCguAGGUgGaCGGGg -3'
miRNA:   3'- cGCCGGUCAa-GGU-CGG--UCCAaC-GCCC- -5'
29014 5' -58.6 NC_006146.1 + 144827 0.67 0.771574
Target:  5'- cCGGCUguUUCCGGCCcacGUUGCGGcGg -3'
miRNA:   3'- cGCCGGucAAGGUCGGuc-CAACGCC-C- -5'
29014 5' -58.6 NC_006146.1 + 73484 0.67 0.771574
Target:  5'- gGCGGUUAacUUCCAGCacCAGGc-GCGGGg -3'
miRNA:   3'- -CGCCGGUc-AAGGUCG--GUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 27628 0.67 0.771574
Target:  5'- gGUGGCCagggaAGUUCCgGGCCAGcGUcacCGGGc -3'
miRNA:   3'- -CGCCGG-----UCAAGG-UCGGUC-CAac-GCCC- -5'
29014 5' -58.6 NC_006146.1 + 13395 0.67 0.771574
Target:  5'- cGCGGCCAcGgacugccUCAGCCAGGUcUGCa-- -3'
miRNA:   3'- -CGCCGGU-Caa-----GGUCGGUCCA-ACGccc -5'
29014 5' -58.6 NC_006146.1 + 123510 0.67 0.771574
Target:  5'- cUGGCCacGGUcgaccCCAGgCGGGUcGCGGGu -3'
miRNA:   3'- cGCCGG--UCAa----GGUCgGUCCAaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 139064 0.67 0.771574
Target:  5'- gGCGGCCAccauaCgGGCCcuGGUggcGCGGGg -3'
miRNA:   3'- -CGCCGGUcaa--GgUCGGu-CCAa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 141940 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 148096 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 154252 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 151174 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 145018 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.