miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 55824 0.67 0.780633
Target:  5'- -aGGCC-GUcCCGGCCuGGGUggGCGGa -3'
miRNA:   3'- cgCCGGuCAaGGUCGG-UCCAa-CGCCc -5'
29014 5' -58.6 NC_006146.1 + 56225 0.69 0.685765
Target:  5'- cGCGaGCCG--UCCAG-CGGGUccGCGGGg -3'
miRNA:   3'- -CGC-CGGUcaAGGUCgGUCCAa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 56489 0.68 0.753111
Target:  5'- aGCGGCauCAGcgcgCgCAGUCGGGccGCGGGg -3'
miRNA:   3'- -CGCCG--GUCaa--G-GUCGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 57035 0.74 0.41898
Target:  5'- aCGGCCGGggcgaagCC-GCCAGGguugagGCGGGa -3'
miRNA:   3'- cGCCGGUCaa-----GGuCGGUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 59761 0.68 0.743725
Target:  5'- -aGGCCAGccgcCCGGCCaccuggGGGUUGaGGGu -3'
miRNA:   3'- cgCCGGUCaa--GGUCGG------UCCAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 67212 0.69 0.67591
Target:  5'- cGUGGCCGGUcgccuggCCGGCCAGGcacaGGa -3'
miRNA:   3'- -CGCCGGUCAa------GGUCGGUCCaacgCCc -5'
29014 5' -58.6 NC_006146.1 + 68112 0.67 0.789566
Target:  5'- gGCGGCCAG--CCGGuCCGcGGUgaGCGGc -3'
miRNA:   3'- -CGCCGGUCaaGGUC-GGU-CCAa-CGCCc -5'
29014 5' -58.6 NC_006146.1 + 69660 0.69 0.685765
Target:  5'- cGCGGuCCuccUCCAGCUGGGggGUGGc -3'
miRNA:   3'- -CGCC-GGucaAGGUCGGUCCaaCGCCc -5'
29014 5' -58.6 NC_006146.1 + 73484 0.67 0.771574
Target:  5'- gGCGGUUAacUUCCAGCacCAGGc-GCGGGg -3'
miRNA:   3'- -CGCCGGUc-AAGGUCG--GUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 74253 0.71 0.570857
Target:  5'- cGCGGCCGucUCCccgggcuggccaaagAGCC-GGUUGCGGu -3'
miRNA:   3'- -CGCCGGUcaAGG---------------UCGGuCCAACGCCc -5'
29014 5' -58.6 NC_006146.1 + 76255 0.7 0.596498
Target:  5'- aUGGCCAGaaUguGUCAGG-UGCGGGu -3'
miRNA:   3'- cGCCGGUCaaGguCGGUCCaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 81386 0.66 0.840082
Target:  5'- aGCGGCCAuuuGggCCaaAGCCAaagagcuuuuGGgaaaUGCGGGc -3'
miRNA:   3'- -CGCCGGU---CaaGG--UCGGU----------CCa---ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92006 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92036 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92089 0.68 0.724684
Target:  5'- gGCGGCCcggccuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- -CGCCGG------UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92125 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92155 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92185 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92215 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92245 0.67 0.789566
Target:  5'- cCGGCCuGUggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGGuCAa-GGu--CGGUCCaaCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.