miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 92275 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92305 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 94380 0.7 0.606411
Target:  5'- gGCGcGCgUAGUUCUucuggAGCCAGG-UGUGGGc -3'
miRNA:   3'- -CGC-CG-GUCAAGG-----UCGGUCCaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 99669 0.69 0.686748
Target:  5'- -aGGCCccaggAGUUgaCCAGCCAGGacucgaagcccccgGCGGGa -3'
miRNA:   3'- cgCCGG-----UCAA--GGUCGGUCCaa------------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 100758 0.66 0.823882
Target:  5'- cCGGCCAGg---AGCCAGGcgaagGCGGc -3'
miRNA:   3'- cGCCGGUCaaggUCGGUCCaa---CGCCc -5'
29014 5' -58.6 NC_006146.1 + 103695 0.67 0.789566
Target:  5'- cCGGCCAGgcgaCCGGCCAcGGccaGUGGa -3'
miRNA:   3'- cGCCGGUCaa--GGUCGGU-CCaa-CGCCc -5'
29014 5' -58.6 NC_006146.1 + 104408 0.67 0.795741
Target:  5'- cCGGCCGGUgcaUCCGGCUgccgcauaccuacaAGGUggacagggGCGGc -3'
miRNA:   3'- cGCCGGUCA---AGGUCGG--------------UCCAa-------CGCCc -5'
29014 5' -58.6 NC_006146.1 + 106319 0.69 0.674923
Target:  5'- -gGGCCAGUUCCAGacacugcCCAuaccUGCGGGc -3'
miRNA:   3'- cgCCGGUCAAGGUC-------GGUcca-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 108899 0.69 0.646174
Target:  5'- cGCGGCCAGcgagUCAGCagcgaccgagCAGGUgacGUGGGc -3'
miRNA:   3'- -CGCCGGUCaa--GGUCG----------GUCCAa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 112271 0.68 0.724684
Target:  5'- gGUGGCauuGGUUCCAGUaguGGGggGCuGGGu -3'
miRNA:   3'- -CGCCGg--UCAAGGUCGg--UCCaaCG-CCC- -5'
29014 5' -58.6 NC_006146.1 + 113750 0.67 0.771574
Target:  5'- aGCGGCCcGUcCCGuCCGGGgcuCGGGg -3'
miRNA:   3'- -CGCCGGuCAaGGUcGGUCCaacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 117247 0.7 0.606411
Target:  5'- aGCGGCCGGggCCAGggGGGUcgGCaGGu -3'
miRNA:   3'- -CGCCGGUCaaGGUCggUCCAa-CGcCC- -5'
29014 5' -58.6 NC_006146.1 + 117575 0.68 0.72756
Target:  5'- cGCGGCCgccgggccuccucGGgcucggacUCCGGCCAGGgagaggaggagagGUGGGa -3'
miRNA:   3'- -CGCCGG-------------UCa-------AGGUCGGUCCaa-----------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 117879 0.66 0.855569
Target:  5'- gGCGGCCGcggCCAGCCGcGUgagGCccaGGGc -3'
miRNA:   3'- -CGCCGGUcaaGGUCGGUcCAa--CG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 120506 0.66 0.823882
Target:  5'- gGCGGCCgAGgacgCgAGCCGcguggaugcGGcgGCGGGa -3'
miRNA:   3'- -CGCCGG-UCaa--GgUCGGU---------CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 122630 0.69 0.656107
Target:  5'- -aGGCCGGggCCcucuuucgcGCCAGGacggcgGCGGGg -3'
miRNA:   3'- cgCCGGUCaaGGu--------CGGUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 123510 0.67 0.771574
Target:  5'- cUGGCCacGGUcgaccCCAGgCGGGUcGCGGGu -3'
miRNA:   3'- cGCCGG--UCAa----GGUCgGUCCAaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 123701 0.72 0.490378
Target:  5'- gGCGGCCAGgggCCuggcGCuCGGGgcggcgGCGGGc -3'
miRNA:   3'- -CGCCGGUCaa-GGu---CG-GUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 124131 0.67 0.789566
Target:  5'- cCGGCCAGccaUCCGcCCGGGgu-CGGGa -3'
miRNA:   3'- cGCCGGUCa--AGGUcGGUCCaacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 124285 0.66 0.818891
Target:  5'- aCGGCCGGgacaucaacaggcucUUCCagGGCCAGGccaauggUGCuGGGu -3'
miRNA:   3'- cGCCGGUC---------------AAGG--UCGGUCCa------ACG-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.