miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 126176 0.67 0.796617
Target:  5'- cGCGGCCAccgcaucaggCCGGCCA----GCGGGg -3'
miRNA:   3'- -CGCCGGUcaa-------GGUCGGUccaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 127070 0.68 0.724684
Target:  5'- gGCGGCgCGGgaagCCgaaagGGCCAGGgcggagcgGUGGGa -3'
miRNA:   3'- -CGCCG-GUCaa--GG-----UCGGUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 127584 0.68 0.705341
Target:  5'- gGCGGCCgAGgccgcgCCGGCCGGGUgagaGUGa- -3'
miRNA:   3'- -CGCCGG-UCaa----GGUCGGUCCAa---CGCcc -5'
29014 5' -58.6 NC_006146.1 + 129351 0.69 0.67591
Target:  5'- aGCGGCCGGUUCucgagCAGCCucAGGaggagcccGCGGa -3'
miRNA:   3'- -CGCCGGUCAAG-----GUCGG--UCCaa------CGCCc -5'
29014 5' -58.6 NC_006146.1 + 137613 0.67 0.804442
Target:  5'- gGCGGCgCAGcggugcCCAGCCGGgccaccccccacccGgaGCGGGg -3'
miRNA:   3'- -CGCCG-GUCaa----GGUCGGUC--------------CaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 137741 0.66 0.837696
Target:  5'- cGCGG-CGGUgcCCAGCCGGgccaccccccacccGgaGCGGGg -3'
miRNA:   3'- -CGCCgGUCAa-GGUCGGUC--------------CaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 137970 0.72 0.518593
Target:  5'- cGCGGCCGGg-CCucCCGGGggcccgGCGGGg -3'
miRNA:   3'- -CGCCGGUCaaGGucGGUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 139064 0.67 0.771574
Target:  5'- gGCGGCCAccauaCgGGCCcuGGUggcGCGGGg -3'
miRNA:   3'- -CGCCGGUcaa--GgUCGGu-CCAa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 140667 0.74 0.377687
Target:  5'- uGCGGCCaauuuccggGGUaUCCGGCCAGcccgGCGGGc -3'
miRNA:   3'- -CGCCGG---------UCA-AGGUCGGUCcaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 141299 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 141454 0.67 0.801847
Target:  5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 141940 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 142344 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 144377 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 144532 0.67 0.801847
Target:  5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 144827 0.67 0.771574
Target:  5'- cCGGCUguUUCCGGCCcacGUUGCGGcGg -3'
miRNA:   3'- cGCCGGucAAGGUCGGuc-CAACGCC-C- -5'
29014 5' -58.6 NC_006146.1 + 145018 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 145422 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 147063 0.66 0.839289
Target:  5'- -gGGCCAGgUCCcggcguagggaaaGGCCAGGgagagagaaGUGGGc -3'
miRNA:   3'- cgCCGGUCaAGG-------------UCGGUCCaa-------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 147455 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.