miRNA display CGI


Results 101 - 120 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 147610 0.67 0.801847
Target:  5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 148096 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 148500 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 150533 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 150580 0.66 0.847918
Target:  5'- uGCuGGCCAucgUCCAGCacccgccugCAGGggaUGUGGGc -3'
miRNA:   3'- -CG-CCGGUca-AGGUCG---------GUCCa--ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 150688 0.67 0.767917
Target:  5'- aGUGGCCAGggggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 151174 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 151578 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 153611 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 153765 0.67 0.801847
Target:  5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 154252 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 154656 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 156688 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 156843 0.67 0.801847
Target:  5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 157330 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 157733 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 161417 0.69 0.656107
Target:  5'- -aGGCCuGUgCCAGgCGGGUguggccccGCGGGa -3'
miRNA:   3'- cgCCGGuCAaGGUCgGUCCAa-------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 162047 0.66 0.832068
Target:  5'- uGUGGgaaaCCGGUUCCA-CCGcGGggGUGGGu -3'
miRNA:   3'- -CGCC----GGUCAAGGUcGGU-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 162394 0.66 0.855569
Target:  5'- cGCGcCCGGgaCCccggugGGCCAGGaugGUGGGg -3'
miRNA:   3'- -CGCcGGUCaaGG------UCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 167243 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.