Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29014 | 5' | -58.6 | NC_006146.1 | + | 157330 | 0.67 | 0.775212 |
Target: 5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3' miRNA: 3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 156843 | 0.67 | 0.801847 |
Target: 5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3' miRNA: 3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 156688 | 0.69 | 0.691659 |
Target: 5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3' miRNA: 3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 154656 | 0.66 | 0.855569 |
Target: 5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3' miRNA: 3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 154252 | 0.67 | 0.775212 |
Target: 5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3' miRNA: 3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 153765 | 0.67 | 0.801847 |
Target: 5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3' miRNA: 3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 153611 | 0.69 | 0.691659 |
Target: 5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3' miRNA: 3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 151578 | 0.66 | 0.855569 |
Target: 5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3' miRNA: 3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 151174 | 0.67 | 0.775212 |
Target: 5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3' miRNA: 3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 150688 | 0.67 | 0.767917 |
Target: 5'- aGUGGCCAGggggacggagGGCCuGGccUGCGGGg -3' miRNA: 3'- -CGCCGGUCaagg------UCGGuCCa-ACGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 150580 | 0.66 | 0.847918 |
Target: 5'- uGCuGGCCAucgUCCAGCacccgccugCAGGggaUGUGGGc -3' miRNA: 3'- -CG-CCGGUca-AGGUCG---------GUCCa--ACGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 150533 | 0.69 | 0.691659 |
Target: 5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3' miRNA: 3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 148500 | 0.66 | 0.855569 |
Target: 5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3' miRNA: 3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 148096 | 0.67 | 0.775212 |
Target: 5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3' miRNA: 3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 147610 | 0.67 | 0.801847 |
Target: 5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3' miRNA: 3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 147455 | 0.69 | 0.691659 |
Target: 5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3' miRNA: 3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 147063 | 0.66 | 0.839289 |
Target: 5'- -gGGCCAGgUCCcggcguagggaaaGGCCAGGgagagagaaGUGGGc -3' miRNA: 3'- cgCCGGUCaAGG-------------UCGGUCCaa-------CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 145422 | 0.66 | 0.855569 |
Target: 5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3' miRNA: 3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 145018 | 0.67 | 0.775212 |
Target: 5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3' miRNA: 3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5' |
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29014 | 5' | -58.6 | NC_006146.1 | + | 144827 | 0.67 | 0.771574 |
Target: 5'- cCGGCUguUUCCGGCCcacGUUGCGGcGg -3' miRNA: 3'- cGCCGGucAAGGUCGGuc-CAACGCC-C- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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