miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 169227 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 12875 0.66 0.840082
Target:  5'- gGUGGCUGGgca-GGCCGGGUcuCGGGu -3'
miRNA:   3'- -CGCCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 103695 0.67 0.789566
Target:  5'- cCGGCCAGgcgaCCGGCCAcGGccaGUGGa -3'
miRNA:   3'- cGCCGGUCaa--GGUCGGU-CCaa-CGCCc -5'
29014 5' -58.6 NC_006146.1 + 92305 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 142344 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92245 0.67 0.789566
Target:  5'- cCGGCCuGUggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGGuCAa-GGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 150533 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 92215 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92275 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 51204 0.68 0.705341
Target:  5'- cGUGGUaCAGggcaUCCacgaGGCCGGGgugGCGGGu -3'
miRNA:   3'- -CGCCG-GUCa---AGG----UCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 52990 0.69 0.695578
Target:  5'- gGCGGaCCug--CCGGCCGuGGccGCGGGg -3'
miRNA:   3'- -CGCC-GGucaaGGUCGGU-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 43520 0.69 0.695578
Target:  5'- -gGGCCAGgcugCCGGCCaccaucagugGGGUguccGUGGGu -3'
miRNA:   3'- cgCCGGUCaa--GGUCGG----------UCCAa---CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 156688 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 153611 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 144377 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 141299 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 161417 0.69 0.656107
Target:  5'- -aGGCCuGUgCCAGgCGGGUguggccccGCGGGa -3'
miRNA:   3'- cgCCGGuCAaGGUCgGUCCAa-------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 127584 0.68 0.705341
Target:  5'- gGCGGCCgAGgccgcgCCGGCCGGGUgagaGUGa- -3'
miRNA:   3'- -CGCCGG-UCaa----GGUCGGUCCAa---CGCcc -5'
29014 5' -58.6 NC_006146.1 + 100758 0.66 0.823882
Target:  5'- cCGGCCAGg---AGCCAGGcgaagGCGGc -3'
miRNA:   3'- cGCCGGUCaaggUCGGUCCaa---CGCCc -5'
29014 5' -58.6 NC_006146.1 + 120506 0.66 0.823882
Target:  5'- gGCGGCCgAGgacgCgAGCCGcguggaugcGGcgGCGGGa -3'
miRNA:   3'- -CGCCGG-UCaa--GgUCGGU---------CCaaCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.