miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 145422 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 73484 0.67 0.771574
Target:  5'- gGCGGUUAacUUCCAGCacCAGGc-GCGGGg -3'
miRNA:   3'- -CGCCGGUc-AAGGUCG--GUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 27628 0.67 0.771574
Target:  5'- gGUGGCCagggaAGUUCCgGGCCAGcGUcacCGGGc -3'
miRNA:   3'- -CGCCGG-----UCAAGG-UCGGUC-CAac-GCCC- -5'
29014 5' -58.6 NC_006146.1 + 141299 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 147455 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 144377 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 150533 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 153611 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 156688 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 43520 0.69 0.695578
Target:  5'- -gGGCCAGgcugCCGGCCaccaucagugGGGUguccGUGGGu -3'
miRNA:   3'- cgCCGGUCaa--GGUCGG----------UCCAa---CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 52990 0.69 0.695578
Target:  5'- gGCGGaCCug--CCGGCCGuGGccGCGGGg -3'
miRNA:   3'- -CGCC-GGucaaGGUCGGU-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 127584 0.68 0.705341
Target:  5'- gGCGGCCgAGgccgcgCCGGCCGGGUgagaGUGa- -3'
miRNA:   3'- -CGCCGG-UCaa----GGUCGGUCCAa---CGCcc -5'
29014 5' -58.6 NC_006146.1 + 51204 0.68 0.705341
Target:  5'- cGUGGUaCAGggcaUCCacgaGGCCGGGgugGCGGGu -3'
miRNA:   3'- -CGCCG-GUCa---AGG----UCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92089 0.68 0.724684
Target:  5'- gGCGGCCcggccuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- -CGCCGG------UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 117575 0.68 0.72756
Target:  5'- cGCGGCCgccgggccuccucGGgcucggacUCCGGCCAGGgagaggaggagagGUGGGa -3'
miRNA:   3'- -CGCCGG-------------UCa-------AGGUCGGUCCaa-----------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 59761 0.68 0.743725
Target:  5'- -aGGCCAGccgcCCGGCCaccuggGGGUUGaGGGu -3'
miRNA:   3'- cgCCGGUCaa--GGUCGG------UCCAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 150688 0.67 0.767917
Target:  5'- aGUGGCCAGggggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 123510 0.67 0.771574
Target:  5'- cUGGCCacGGUcgaccCCAGgCGGGUcGCGGGu -3'
miRNA:   3'- cGCCGG--UCAa----GGUCgGUCCAaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 139064 0.67 0.771574
Target:  5'- gGCGGCCAccauaCgGGCCcuGGUggcGCGGGg -3'
miRNA:   3'- -CGCCGGUcaa--GgUCGGu-CCAa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 13395 0.67 0.771574
Target:  5'- cGCGGCCAcGgacugccUCAGCCAGGUcUGCa-- -3'
miRNA:   3'- -CGCCGGU-Caa-----GGUCGGUCCA-ACGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.