miRNA display CGI


Results 101 - 120 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 156688 0.69 0.691659
Target:  5'- gGCGGCUGGgggucgggcuggCCuGCCAGGggGCaaaGGGg -3'
miRNA:   3'- -CGCCGGUCaa----------GGuCGGUCCaaCG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 43520 0.69 0.695578
Target:  5'- -gGGCCAGgcugCCGGCCaccaucagugGGGUguccGUGGGu -3'
miRNA:   3'- cgCCGGUCaa--GGUCGG----------UCCAa---CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 52990 0.69 0.695578
Target:  5'- gGCGGaCCug--CCGGCCGuGGccGCGGGg -3'
miRNA:   3'- -CGCC-GGucaaGGUCGGU-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 127584 0.68 0.705341
Target:  5'- gGCGGCCgAGgccgcgCCGGCCGGGUgagaGUGa- -3'
miRNA:   3'- -CGCCGG-UCaa----GGUCGGUCCAa---CGCcc -5'
29014 5' -58.6 NC_006146.1 + 123701 0.72 0.490378
Target:  5'- gGCGGCCAGgggCCuggcGCuCGGGgcggcgGCGGGc -3'
miRNA:   3'- -CGCCGGUCaa-GGu---CG-GUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 42790 0.72 0.481132
Target:  5'- cGUGGCCGcc-UCGGCCAGGUUgGCGGu -3'
miRNA:   3'- -CGCCGGUcaaGGUCGGUCCAA-CGCCc -5'
29014 5' -58.6 NC_006146.1 + 92036 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92006 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 14132 0.67 0.789566
Target:  5'- gGCGGCCua---CAGCCAGGUguacGCGcuGGc -3'
miRNA:   3'- -CGCCGGucaagGUCGGUCCAa---CGC--CC- -5'
29014 5' -58.6 NC_006146.1 + 157330 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 154252 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 151174 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 148096 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 141940 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 73484 0.67 0.771574
Target:  5'- gGCGGUUAacUUCCAGCacCAGGc-GCGGGg -3'
miRNA:   3'- -CGCCGGUc-AAGGUCG--GUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 13395 0.67 0.771574
Target:  5'- cGCGGCCAcGgacugccUCAGCCAGGUcUGCa-- -3'
miRNA:   3'- -CGCCGGU-Caa-----GGUCGGUCCA-ACGccc -5'
29014 5' -58.6 NC_006146.1 + 27628 0.67 0.771574
Target:  5'- gGUGGCCagggaAGUUCCgGGCCAGcGUcacCGGGc -3'
miRNA:   3'- -CGCCGG-----UCAAGG-UCGGUC-CAac-GCCC- -5'
29014 5' -58.6 NC_006146.1 + 10735 0.77 0.277357
Target:  5'- gGCaGCCAGagCCAGCCGGGgccaUGCGGc -3'
miRNA:   3'- -CGcCGGUCaaGGUCGGUCCa---ACGCCc -5'
29014 5' -58.6 NC_006146.1 + 140667 0.74 0.377687
Target:  5'- uGCGGCCaauuuccggGGUaUCCGGCCAGcccgGCGGGc -3'
miRNA:   3'- -CGCCGG---------UCA-AGGUCGGUCcaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 15041 0.74 0.41898
Target:  5'- cUGGCCAGggCCcGCCGGGccUGCGaGGa -3'
miRNA:   3'- cGCCGGUCaaGGuCGGUCCa-ACGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.