miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 137741 0.66 0.837696
Target:  5'- cGCGG-CGGUgcCCAGCCGGgccaccccccacccGgaGCGGGg -3'
miRNA:   3'- -CGCCgGUCAa-GGUCGGUC--------------CaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 162047 0.66 0.832068
Target:  5'- uGUGGgaaaCCGGUUCCA-CCGcGGggGUGGGu -3'
miRNA:   3'- -CGCC----GGUCAAGGUcGGU-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 39995 0.66 0.832068
Target:  5'- uGCGGCCcGUagUGGCCGG--UGUGGGc -3'
miRNA:   3'- -CGCCGGuCAagGUCGGUCcaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 41055 0.66 0.82963
Target:  5'- gGCGGCCcugGGggCCucgggguggagggaGGCCAGGgacaGCGaGGg -3'
miRNA:   3'- -CGCCGG---UCaaGG--------------UCGGUCCaa--CGC-CC- -5'
29014 5' -58.6 NC_006146.1 + 49866 0.66 0.823882
Target:  5'- aCGGcCCAGUaugUCCAGgCGGGUcuUGCGc- -3'
miRNA:   3'- cGCC-GGUCA---AGGUCgGUCCA--ACGCcc -5'
29014 5' -58.6 NC_006146.1 + 100758 0.66 0.823882
Target:  5'- cCGGCCAGg---AGCCAGGcgaagGCGGc -3'
miRNA:   3'- cGCCGGUCaaggUCGGUCCaa---CGCCc -5'
29014 5' -58.6 NC_006146.1 + 120506 0.66 0.823882
Target:  5'- gGCGGCCgAGgacgCgAGCCGcguggaugcGGcgGCGGGa -3'
miRNA:   3'- -CGCCGG-UCaa--GgUCGGU---------CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 124285 0.66 0.818891
Target:  5'- aCGGCCGGgacaucaacaggcucUUCCagGGCCAGGccaauggUGCuGGGu -3'
miRNA:   3'- cGCCGGUC---------------AAGG--UCGGUCCa------ACG-CCC- -5'
29014 5' -58.6 NC_006146.1 + 54998 0.66 0.815531
Target:  5'- gGUGGCCGGaagccccCCGGgCGGGauggggGCGGGc -3'
miRNA:   3'- -CGCCGGUCaa-----GGUCgGUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 49482 0.67 0.807024
Target:  5'- -gGGCCgcGGUgUCGGCCAGGggcgGCGuGGc -3'
miRNA:   3'- cgCCGG--UCAaGGUCGGUCCaa--CGC-CC- -5'
29014 5' -58.6 NC_006146.1 + 137613 0.67 0.804442
Target:  5'- gGCGGCgCAGcggugcCCAGCCGGgccaccccccacccGgaGCGGGg -3'
miRNA:   3'- -CGCCG-GUCaa----GGUCGGUC--------------CaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 144532 0.67 0.801847
Target:  5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 156843 0.67 0.801847
Target:  5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 153765 0.67 0.801847
Target:  5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 147610 0.67 0.801847
Target:  5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 141454 0.67 0.801847
Target:  5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 39833 0.67 0.798366
Target:  5'- gGCGGCCucggccgcacAGUgggCCGGCgGGGgcugugUGCccGGGg -3'
miRNA:   3'- -CGCCGG----------UCAa--GGUCGgUCCa-----ACG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 126176 0.67 0.796617
Target:  5'- cGCGGCCAccgcaucaggCCGGCCA----GCGGGg -3'
miRNA:   3'- -CGCCGGUcaa-------GGUCGGUccaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 104408 0.67 0.795741
Target:  5'- cCGGCCGGUgcaUCCGGCUgccgcauaccuacaAGGUggacagggGCGGc -3'
miRNA:   3'- cGCCGGUCA---AGGUCGG--------------UCCAa-------CGCCc -5'
29014 5' -58.6 NC_006146.1 + 92245 0.67 0.789566
Target:  5'- cCGGCCuGUggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGGuCAa-GGu--CGGUCCaaCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.