miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 3' -61.8 NC_006146.1 + 168995 0.66 0.718241
Target:  5'- cCCCUCUCCgaaaucaCCAgaaagugggcacuGUGCCaGGGCCUucGGg -3'
miRNA:   3'- -GGGAGAGGa------GGU-------------CGCGGgCCUGGA--CC- -5'
29015 3' -61.8 NC_006146.1 + 169927 0.66 0.718241
Target:  5'- cCCCUCUCCgaaaucaCCAgaaagugggcacuGUGCCaGGGCCUucGGg -3'
miRNA:   3'- -GGGAGAGGa------GGU-------------CGCGGgCCUGGA--CC- -5'
29015 3' -61.8 NC_006146.1 + 168063 0.66 0.718241
Target:  5'- cCCCUCUCCgaaaucaCCAgaaagugggcacuGUGCCaGGGCCUucGGg -3'
miRNA:   3'- -GGGAGAGGa------GGU-------------CGCGGgCCUGGA--CC- -5'
29015 3' -61.8 NC_006146.1 + 124300 0.66 0.718241
Target:  5'- aCaggCUCUUCCAGgGCCaggccaaUGGugCUGGg -3'
miRNA:   3'- gGga-GAGGAGGUCgCGG-------GCCugGACC- -5'
29015 3' -61.8 NC_006146.1 + 49237 0.66 0.709799
Target:  5'- gCCCUCcugcaCCUCCGG-GUCCaGGGCC-GGu -3'
miRNA:   3'- -GGGAGa----GGAGGUCgCGGG-CCUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 5346 0.66 0.709799
Target:  5'- aCCCUgUCCUCucauuucugCAGCGCUCGcugUCUGGu -3'
miRNA:   3'- -GGGAgAGGAG---------GUCGCGGGCcu-GGACC- -5'
29015 3' -61.8 NC_006146.1 + 41659 0.66 0.700364
Target:  5'- aCCCUCgcgCCUCaccuGgGCCCGucCCUGc -3'
miRNA:   3'- -GGGAGa--GGAGgu--CgCGGGCcuGGACc -5'
29015 3' -61.8 NC_006146.1 + 119035 0.66 0.700364
Target:  5'- cCCCUCuucauccccaUCC-CCGG-GCUCGGGCCaGGc -3'
miRNA:   3'- -GGGAG----------AGGaGGUCgCGGGCCUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 162380 0.66 0.700364
Target:  5'- cCCCUUggCgcgCCcGCGCCCGGgACCccggUGGg -3'
miRNA:   3'- -GGGAGagGa--GGuCGCGGGCC-UGG----ACC- -5'
29015 3' -61.8 NC_006146.1 + 102766 0.66 0.698471
Target:  5'- cCCCUUUCCUgCguggcguGGCGCCgcucccgCGGACCggcUGGc -3'
miRNA:   3'- -GGGAGAGGAgG-------UCGCGG-------GCCUGG---ACC- -5'
29015 3' -61.8 NC_006146.1 + 60364 0.66 0.693729
Target:  5'- gCCUCUuugaacaggaggUCUCCgaggugcAGCGCCUGGAgaacaucugcacccuCCUGGa -3'
miRNA:   3'- gGGAGA------------GGAGG-------UCGCGGGCCU---------------GGACC- -5'
29015 3' -61.8 NC_006146.1 + 56395 0.66 0.690879
Target:  5'- gCCCU-UCUUCCAGUgGCaCgGGACCgGGa -3'
miRNA:   3'- -GGGAgAGGAGGUCG-CG-GgCCUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 157455 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 154377 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 151299 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 148221 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 145143 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 142065 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 126212 0.66 0.689928
Target:  5'- uCCCUCaucgUCCUCCucuccGgGCCCGGagucacuGCCgGGc -3'
miRNA:   3'- -GGGAG----AGGAGGu----CgCGGGCC-------UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 125355 0.67 0.68135
Target:  5'- gUCUUC-CCUCCccUGCCUGGcCCUGGu -3'
miRNA:   3'- -GGGAGaGGAGGucGCGGGCCuGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.