miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29016 3' -57.2 NC_006146.1 + 159228 0.66 0.89924
Target:  5'- --gUGGAuACCGUGGGGggCCAGGcUGg -3'
miRNA:   3'- ggaGCCUcUGGUACCCCa-GGUCCuAU- -5'
29016 3' -57.2 NC_006146.1 + 166751 0.66 0.89924
Target:  5'- uUUCGGAcggGACCAgcaguggcgaGGGGaCCAGGAg- -3'
miRNA:   3'- gGAGCCU---CUGGUa---------CCCCaGGUCCUau -5'
29016 3' -57.2 NC_006146.1 + 159283 0.66 0.895407
Target:  5'- gCCUCGG-GGCCcUcgcagucggcaaacaGGGG-CCAGGAg- -3'
miRNA:   3'- -GGAGCCuCUGGuA---------------CCCCaGGUCCUau -5'
29016 3' -57.2 NC_006146.1 + 120219 0.66 0.892806
Target:  5'- -gUCGGuGcCUGUGGGG-CCGGGGUu -3'
miRNA:   3'- ggAGCCuCuGGUACCCCaGGUCCUAu -5'
29016 3' -57.2 NC_006146.1 + 4952 0.66 0.886152
Target:  5'- gCCcCGGGGACCA-GGGG-CCAcGAg- -3'
miRNA:   3'- -GGaGCCUCUGGUaCCCCaGGUcCUau -5'
29016 3' -57.2 NC_006146.1 + 122487 0.66 0.87928
Target:  5'- gCUCGGGGACgGcggcGGGGUCgAGaGAa- -3'
miRNA:   3'- gGAGCCUCUGgUa---CCCCAGgUC-CUau -5'
29016 3' -57.2 NC_006146.1 + 44499 0.66 0.87928
Target:  5'- gCUCGc-GACCccGGGcGUCCGGGGUu -3'
miRNA:   3'- gGAGCcuCUGGuaCCC-CAGGUCCUAu -5'
29016 3' -57.2 NC_006146.1 + 112548 0.66 0.87928
Target:  5'- aCUCGGAGcUCAgacccGGGGUCgugAGGAUGc -3'
miRNA:   3'- gGAGCCUCuGGUa----CCCCAGg--UCCUAU- -5'
29016 3' -57.2 NC_006146.1 + 70359 0.66 0.872196
Target:  5'- uUCUUGGAGGacuUCAUGauugcgauGGUCCGGGAUGa -3'
miRNA:   3'- -GGAGCCUCU---GGUACc-------CCAGGUCCUAU- -5'
29016 3' -57.2 NC_006146.1 + 162381 0.66 0.87003
Target:  5'- cCCUUGGcgcgcccgcgcccgGGACCccGGuGGgCCAGGAUGg -3'
miRNA:   3'- -GGAGCC--------------UCUGGuaCC-CCaGGUCCUAU- -5'
29016 3' -57.2 NC_006146.1 + 40518 0.66 0.864904
Target:  5'- gCCUCGGAGGCU-UGcuGUCCAGGu-- -3'
miRNA:   3'- -GGAGCCUCUGGuACccCAGGUCCuau -5'
29016 3' -57.2 NC_006146.1 + 6121 0.66 0.864904
Target:  5'- --gUGGAGGCgGUGGGGaUCCAGa--- -3'
miRNA:   3'- ggaGCCUCUGgUACCCC-AGGUCcuau -5'
29016 3' -57.2 NC_006146.1 + 69566 0.66 0.864904
Target:  5'- --aCGGAGACCgucugGUGGGGgaagauggCCAGGu-- -3'
miRNA:   3'- ggaGCCUCUGG-----UACCCCa-------GGUCCuau -5'
29016 3' -57.2 NC_006146.1 + 135923 0.67 0.849719
Target:  5'- gCUCGG-GGCCG-GGGG-CCGGGu-- -3'
miRNA:   3'- gGAGCCuCUGGUaCCCCaGGUCCuau -5'
29016 3' -57.2 NC_006146.1 + 135645 0.67 0.849719
Target:  5'- gCUCGG-GGCCG-GGGG-CCGGGu-- -3'
miRNA:   3'- gGAGCCuCUGGUaCCCCaGGUCCuau -5'
29016 3' -57.2 NC_006146.1 + 136109 0.67 0.849719
Target:  5'- gCUCGG-GGCCG-GGGG-CCGGGu-- -3'
miRNA:   3'- gGAGCCuCUGGUaCCCCaGGUCCuau -5'
29016 3' -57.2 NC_006146.1 + 136388 0.67 0.849719
Target:  5'- gCUCGG-GGCCG-GGGG-CCGGGu-- -3'
miRNA:   3'- gGAGCCuCUGGUaCCCCaGGUCCuau -5'
29016 3' -57.2 NC_006146.1 + 135180 0.67 0.849719
Target:  5'- gCUCGG-GGCCG-GGGG-CCGGGu-- -3'
miRNA:   3'- gGAGCCuCUGGUaCCCCaGGUCCuau -5'
29016 3' -57.2 NC_006146.1 + 135273 0.67 0.849719
Target:  5'- gCUCGG-GGCCG-GGGG-CCGGGu-- -3'
miRNA:   3'- gGAGCCuCUGGUaCCCCaGGUCCuau -5'
29016 3' -57.2 NC_006146.1 + 154675 0.67 0.849719
Target:  5'- gUCUUGG--GCC-UGGGaGUCCGGGGUGu -3'
miRNA:   3'- -GGAGCCucUGGuACCC-CAGGUCCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.