miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29016 5' -62.3 NC_006146.1 + 91736 0.66 0.70459
Target:  5'- uUCCUCCcagUGCcuccguUCUCCGGGUUCuuGGGu -3'
miRNA:   3'- cGGGAGG---ACGu-----GGAGGCCCAGGu-CCC- -5'
29016 5' -62.3 NC_006146.1 + 12830 0.66 0.70459
Target:  5'- aGCCCUCCgGCgGCCggacCCGaGGaggcgCCuGGGg -3'
miRNA:   3'- -CGGGAGGaCG-UGGa---GGC-CCa----GGuCCC- -5'
29016 5' -62.3 NC_006146.1 + 137703 0.66 0.70459
Target:  5'- cCCCUCCgGCcucCCcCCGGGgugCCcGGGc -3'
miRNA:   3'- cGGGAGGaCGu--GGaGGCCCa--GGuCCC- -5'
29016 5' -62.3 NC_006146.1 + 3620 0.66 0.701751
Target:  5'- cCCCUCCcgccgGCcauccccacgcgcgGCC-CCGGGcccuccccgacaUCCAGGGa -3'
miRNA:   3'- cGGGAGGa----CG--------------UGGaGGCCC------------AGGUCCC- -5'
29016 5' -62.3 NC_006146.1 + 2688 0.66 0.701751
Target:  5'- cCCCUCCcgccgGCcauccccacgcgcgGCC-CCGGGcccuccccgacaUCCAGGGa -3'
miRNA:   3'- cGGGAGGa----CG--------------UGGaGGCCC------------AGGUCCC- -5'
29016 5' -62.3 NC_006146.1 + 1756 0.66 0.701751
Target:  5'- cCCCUCCcgccgGCcauccccacgcgcgGCC-CCGGGcccuccccgacaUCCAGGGa -3'
miRNA:   3'- cGGGAGGa----CG--------------UGGaGGCCC------------AGGUCCC- -5'
29016 5' -62.3 NC_006146.1 + 824 0.66 0.701751
Target:  5'- cCCCUCCcgccgGCcauccccacgcgcgGCC-CCGGGcccuccccgacaUCCAGGGa -3'
miRNA:   3'- cGGGAGGa----CG--------------UGGaGGCCC------------AGGUCCC- -5'
29016 5' -62.3 NC_006146.1 + 33713 0.66 0.701751
Target:  5'- uGCCCggCCUacccccguucuggaGCuCCUCC-GGUCCGGuGGg -3'
miRNA:   3'- -CGGGa-GGA--------------CGuGGAGGcCCAGGUC-CC- -5'
29016 5' -62.3 NC_006146.1 + 23339 0.66 0.696058
Target:  5'- gGCCCUgcagaccgaCCUcaGCGCCUggcgcguggaaauaGGGUCUAGGGg -3'
miRNA:   3'- -CGGGA---------GGA--CGUGGAgg------------CCCAGGUCCC- -5'
29016 5' -62.3 NC_006146.1 + 31773 0.66 0.695107
Target:  5'- uGCCCccaCCUGCGCCaUCGGaGccagcUCCGGGa -3'
miRNA:   3'- -CGGGa--GGACGUGGaGGCC-C-----AGGUCCc -5'
29016 5' -62.3 NC_006146.1 + 160105 0.66 0.695107
Target:  5'- uGCCCagCgugGCgACCUCCcucaGGGgguagguggCCAGGGg -3'
miRNA:   3'- -CGGGagGa--CG-UGGAGG----CCCa--------GGUCCC- -5'
29016 5' -62.3 NC_006146.1 + 57210 0.66 0.695107
Target:  5'- cGCCgUCCccGgGCCggaggCCGGGcCCGGGc -3'
miRNA:   3'- -CGGgAGGa-CgUGGa----GGCCCaGGUCCc -5'
29016 5' -62.3 NC_006146.1 + 160646 0.66 0.695107
Target:  5'- aUUCUCCUGUGCUUCCucaGGGaggccUUCAGGGc -3'
miRNA:   3'- cGGGAGGACGUGGAGG---CCC-----AGGUCCC- -5'
29016 5' -62.3 NC_006146.1 + 43688 0.66 0.685577
Target:  5'- gGCCCUCCgagaagGcCACUa-CGGcGUCCAGGu -3'
miRNA:   3'- -CGGGAGGa-----C-GUGGagGCC-CAGGUCCc -5'
29016 5' -62.3 NC_006146.1 + 23709 0.66 0.685577
Target:  5'- cCCCUCCucUGCGCa-CCGGGcgaAGGGg -3'
miRNA:   3'- cGGGAGG--ACGUGgaGGCCCaggUCCC- -5'
29016 5' -62.3 NC_006146.1 + 70802 0.66 0.685577
Target:  5'- cGCagaCUCCUGUccACCgUCCGGGUggAGGa -3'
miRNA:   3'- -CGg--GAGGACG--UGG-AGGCCCAggUCCc -5'
29016 5' -62.3 NC_006146.1 + 51568 0.66 0.685577
Target:  5'- aCCCUgg-GCGCCgCCGGGaggggcCCGGGGg -3'
miRNA:   3'- cGGGAggaCGUGGaGGCCCa-----GGUCCC- -5'
29016 5' -62.3 NC_006146.1 + 121380 0.66 0.684622
Target:  5'- aGCCCUauuucGCGCCUCgGGccucaacGUCCGGGa -3'
miRNA:   3'- -CGGGAgga--CGUGGAGgCC-------CAGGUCCc -5'
29016 5' -62.3 NC_006146.1 + 71904 0.66 0.676008
Target:  5'- aCCCUCCUGCgcgcgGCCUCUgaccuGGG-CCugaccuGGGc -3'
miRNA:   3'- cGGGAGGACG-----UGGAGG-----CCCaGGu-----CCC- -5'
29016 5' -62.3 NC_006146.1 + 122582 0.66 0.676008
Target:  5'- gGCCCaccaccgCCaGCACCUCCGacGGUggAGGGc -3'
miRNA:   3'- -CGGGa------GGaCGUGGAGGC--CCAggUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.