miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 3' -63.6 NC_006146.1 + 27349 0.66 0.618638
Target:  5'- cGGGUGGCg-CGGcaAGGCcGGGggGCg -3'
miRNA:   3'- aCCCGCCGggGCCagUCCG-CCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 56223 0.66 0.618638
Target:  5'- aGGGCcugGGUCUgGGUCAGGUauacucucuGGAGACc -3'
miRNA:   3'- aCCCG---CCGGGgCCAGUCCGc--------CCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 24085 0.66 0.618638
Target:  5'- cUGGcGCGGCCUCgccugggacgcgGGUCgaGGGCGGcuGGCa -3'
miRNA:   3'- -ACC-CGCCGGGG------------CCAG--UCCGCCcuUUG- -5'
29017 3' -63.6 NC_006146.1 + 14343 0.66 0.618638
Target:  5'- aGGGCcguugcGGCCCUgcugguggGGUCGGGUcccGGGAu-- -3'
miRNA:   3'- aCCCG------CCGGGG--------CCAGUCCG---CCCUuug -5'
29017 3' -63.6 NC_006146.1 + 48636 0.66 0.618638
Target:  5'- gGGGCgGGCUCCGGgCGGGUGcccAGCg -3'
miRNA:   3'- aCCCG-CCGGGGCCaGUCCGCccuUUG- -5'
29017 3' -63.6 NC_006146.1 + 47880 0.66 0.618638
Target:  5'- cUGGGCcgccucGGCCUCGGUCAGcGCuccGAGAa -3'
miRNA:   3'- -ACCCG------CCGGGGCCAGUC-CGcc-CUUUg -5'
29017 3' -63.6 NC_006146.1 + 151378 0.66 0.608959
Target:  5'- -cGGCGuacgaGUCCCGcugcugCAGGCGGGGGAUg -3'
miRNA:   3'- acCCGC-----CGGGGCca----GUCCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 24049 0.66 0.608959
Target:  5'- gGGugacGCGGCCCCGaGcCAGGCccGGGcucuACg -3'
miRNA:   3'- aCC----CGCCGGGGC-CaGUCCG--CCCuu--UG- -5'
29017 3' -63.6 NC_006146.1 + 139359 0.66 0.606058
Target:  5'- gGGGCGGCgCCGGgggGGGUGccugcuguuuaguaGGAGAa -3'
miRNA:   3'- aCCCGCCGgGGCCag-UCCGC--------------CCUUUg -5'
29017 3' -63.6 NC_006146.1 + 156509 0.66 0.599296
Target:  5'- cGGcguacGCGGCC-CGGagGGgaGCGGGAGGCg -3'
miRNA:   3'- aCC-----CGCCGGgGCCagUC--CGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 15950 0.66 0.59833
Target:  5'- cUGGGUGGCUgggcaggCCGGUCucGGGUcuGGGGGu- -3'
miRNA:   3'- -ACCCGCCGG-------GGCCAG--UCCG--CCCUUug -5'
29017 3' -63.6 NC_006146.1 + 166835 0.66 0.589654
Target:  5'- --cGCGGCCCgGGUCc-GCGuGGAGAUu -3'
miRNA:   3'- accCGCCGGGgCCAGucCGC-CCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 137573 0.66 0.589654
Target:  5'- cGGGUccgcugcccGGUCCUGGagcUCGGGCcGGggGCc -3'
miRNA:   3'- aCCCG---------CCGGGGCC---AGUCCGcCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 62099 0.66 0.58004
Target:  5'- cGuGGCGGCaggaCUGcUCGccucGGCGGGAGACc -3'
miRNA:   3'- aC-CCGCCGg---GGCcAGU----CCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 53621 0.66 0.579081
Target:  5'- gGGGUGGUCuCCgGGUCGGcaggaucGCGGGGcuCa -3'
miRNA:   3'- aCCCGCCGG-GG-CCAGUC-------CGCCCUuuG- -5'
29017 3' -63.6 NC_006146.1 + 44557 0.66 0.57046
Target:  5'- gGGGCcggGGCUCCGGguggCuGGC-GGAAAUg -3'
miRNA:   3'- aCCCG---CCGGGGCCa---GuCCGcCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 61935 0.66 0.57046
Target:  5'- gGGGCuccagGGCCCUGGUCca-CGGGAcgguGCa -3'
miRNA:   3'- aCCCG-----CCGGGGCCAGuccGCCCUu---UG- -5'
29017 3' -63.6 NC_006146.1 + 137874 0.66 0.57046
Target:  5'- cGGGCcccGCCCCGGgccGGCaGGGGGu- -3'
miRNA:   3'- aCCCGc--CGGGGCCaguCCG-CCCUUug -5'
29017 3' -63.6 NC_006146.1 + 141721 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 144799 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.