miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 3' -63.6 NC_006146.1 + 24049 0.66 0.608959
Target:  5'- gGGugacGCGGCCCCGaGcCAGGCccGGGcucuACg -3'
miRNA:   3'- aCC----CGCCGGGGC-CaGUCCG--CCCuu--UG- -5'
29017 3' -63.6 NC_006146.1 + 14343 0.66 0.618638
Target:  5'- aGGGCcguugcGGCCCUgcugguggGGUCGGGUcccGGGAu-- -3'
miRNA:   3'- aCCCG------CCGGGG--------CCAGUCCG---CCCUuug -5'
29017 3' -63.6 NC_006146.1 + 24085 0.66 0.618638
Target:  5'- cUGGcGCGGCCUCgccugggacgcgGGUCgaGGGCGGcuGGCa -3'
miRNA:   3'- -ACC-CGCCGGGG------------CCAG--UCCGCCcuUUG- -5'
29017 3' -63.6 NC_006146.1 + 56223 0.66 0.618638
Target:  5'- aGGGCcugGGUCUgGGUCAGGUauacucucuGGAGACc -3'
miRNA:   3'- aCCCG---CCGGGgCCAGUCCGc--------CCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 27349 0.66 0.618638
Target:  5'- cGGGUGGCg-CGGcaAGGCcGGGggGCg -3'
miRNA:   3'- aCCCGCCGggGCCagUCCG-CCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 150955 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 61935 0.66 0.57046
Target:  5'- gGGGCuccagGGCCCUGGUCca-CGGGAcgguGCa -3'
miRNA:   3'- aCCCG-----CCGGGGCCAGuccGCCCUu---UG- -5'
29017 3' -63.6 NC_006146.1 + 141721 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 144799 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 147877 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 51571 0.67 0.504773
Target:  5'- cUGGGC-GCCgCCGGgagGGGCccgGGGGAGCc -3'
miRNA:   3'- -ACCCGcCGG-GGCCag-UCCG---CCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 92326 0.67 0.551422
Target:  5'- gGGGCGGgCCCGGcCugGGGCagcugauaugGGGcgGCu -3'
miRNA:   3'- aCCCGCCgGGGCCaG--UCCG----------CCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 168541 0.67 0.513975
Target:  5'- cUGGG-GGCCUCGGgggCGGaGgGGGggGu -3'
miRNA:   3'- -ACCCgCCGGGGCCa--GUC-CgCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 159856 0.67 0.532581
Target:  5'- gUGGGUGGUuagaaaugcuuUCagaGGUCGcGCGGGAGACc -3'
miRNA:   3'- -ACCCGCCG-----------GGg--CCAGUcCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 59601 0.67 0.532581
Target:  5'- aGGGCGGCgucCCCcGUCAGGUccuuGaGGAAAa -3'
miRNA:   3'- aCCCGCCG---GGGcCAGUCCG----C-CCUUUg -5'
29017 3' -63.6 NC_006146.1 + 49081 0.67 0.513052
Target:  5'- aGGGCugaGGCUCCGGcuguggcUCAGGCGGc---- -3'
miRNA:   3'- aCCCG---CCGGGGCC-------AGUCCGCCcuuug -5'
29017 3' -63.6 NC_006146.1 + 161432 0.67 0.508446
Target:  5'- gGGuGUGGCCCCGcGggaacccaaggcgcgUgGGGCGGGuAGGCu -3'
miRNA:   3'- aCC-CGCCGGGGC-C---------------AgUCCGCCC-UUUG- -5'
29017 3' -63.6 NC_006146.1 + 137812 0.67 0.522316
Target:  5'- cGGG-GGuCCgCCGGUCcggugcaccuggaAGGCaGGGggGCu -3'
miRNA:   3'- aCCCgCC-GG-GGCCAG-------------UCCG-CCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 101976 0.67 0.504773
Target:  5'- cUGGGCccaGGCCCCGGUCucguccauuuugAGcGCGGuGGc-- -3'
miRNA:   3'- -ACCCG---CCGGGGCCAG------------UC-CGCC-CUuug -5'
29017 3' -63.6 NC_006146.1 + 71220 0.67 0.503856
Target:  5'- cGGG-GGCUucgaguccuggCUGGUCAacuccuggggccuGGCGGGggGCg -3'
miRNA:   3'- aCCCgCCGG-----------GGCCAGU-------------CCGCCCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.