Results 1 - 20 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29017 | 3' | -63.6 | NC_006146.1 | + | 54249 | 1.09 | 0.000688 |
Target: 5'- cUGGGCGGCCCCGGUCAGGCGGGAAACg -3' miRNA: 3'- -ACCCGCCGGGGCCAGUCCGCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 44750 | 0.84 | 0.044036 |
Target: 5'- cGGGCGGCugugguugucggggCCCGG-CGGGCGGGGAACc -3' miRNA: 3'- aCCCGCCG--------------GGGCCaGUCCGCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 159432 | 0.8 | 0.075894 |
Target: 5'- cGGGUGGCUgaUGGUCgAGGCGGGGAACu -3' miRNA: 3'- aCCCGCCGGg-GCCAG-UCCGCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 23948 | 0.8 | 0.088299 |
Target: 5'- aGGGCGGCgacuuucccCCCgGGUCGGGUGGGGGAg -3' miRNA: 3'- aCCCGCCG---------GGG-CCAGUCCGCCCUUUg -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 68109 | 0.75 | 0.193272 |
Target: 5'- gUGGGCGGCCagCCGGUCc-GCGGuGAGCg -3' miRNA: 3'- -ACCCGCCGG--GGCCAGucCGCCcUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 117183 | 0.74 | 0.202591 |
Target: 5'- --cGCGGCuCCCGGagAGGaCGGGGAACg -3' miRNA: 3'- accCGCCG-GGGCCagUCC-GCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 39997 | 0.74 | 0.20691 |
Target: 5'- gUGGGUGGCCcggcagccuuugaCCGGUCAGaCGGGGcAACu -3' miRNA: 3'- -ACCCGCCGG-------------GGCCAGUCcGCCCU-UUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 43597 | 0.74 | 0.212297 |
Target: 5'- gGGGCGGgaggCCgGGUCGGGuCGGGGGAa -3' miRNA: 3'- aCCCGCCg---GGgCCAGUCC-GCCCUUUg -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 41052 | 0.74 | 0.217299 |
Target: 5'- cGcGGCGGCCCUGGgggccUCGGGguggaGGGAGGCc -3' miRNA: 3'- aC-CCGCCGGGGCC-----AGUCCg----CCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 92116 | 0.74 | 0.221886 |
Target: 5'- gGGGCGGgCCCGGcCugGGGCugcugcuGGGggGCg -3' miRNA: 3'- aCCCGCCgGGGCCaG--UCCG-------CCCuuUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 92266 | 0.74 | 0.221886 |
Target: 5'- gGGGCGGgCCCGGcCugGGGCugcugcuGGGggGCg -3' miRNA: 3'- aCCCGCCgGGGCCaG--UCCG-------CCCuuUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 92027 | 0.74 | 0.221886 |
Target: 5'- gGGGCGGgCCCGGcCugGGGCugcugcuGGGggGCg -3' miRNA: 3'- aCCCGCCgGGGCCaG--UCCG-------CCCuuUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 92176 | 0.74 | 0.221886 |
Target: 5'- gGGGCGGgCCCGGcCugGGGCugcugcuGGGggGCg -3' miRNA: 3'- aCCCGCCgGGGCCaG--UCCG-------CCCuuUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 51933 | 0.73 | 0.227604 |
Target: 5'- cGGGCGGCCCCGGU---GCGGucuGCg -3' miRNA: 3'- aCCCGCCGGGGCCAgucCGCCcuuUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 57341 | 0.73 | 0.238321 |
Target: 5'- gGGGCggGGCCCCGGgugUCGGuGaGGGAGGCu -3' miRNA: 3'- aCCCG--CCGGGGCC---AGUC-CgCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 129863 | 0.73 | 0.243835 |
Target: 5'- aGGGCcGCCgCGGaCGGGgGGGAGAUg -3' miRNA: 3'- aCCCGcCGGgGCCaGUCCgCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 166675 | 0.73 | 0.249456 |
Target: 5'- gGGaGCGGUguggCCUGG-CAGGgGGGAGACg -3' miRNA: 3'- aCC-CGCCG----GGGCCaGUCCgCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 54715 | 0.72 | 0.273011 |
Target: 5'- -cGGCgGGCCCgGGUCAGGgcggccgagGGGAGACu -3' miRNA: 3'- acCCG-CCGGGgCCAGUCCg--------CCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 129117 | 0.72 | 0.298318 |
Target: 5'- aGGGCcugagagcgGGCgCCCGGgcgCAgggccuccGGCGGGAAGCc -3' miRNA: 3'- aCCCG---------CCG-GGGCCa--GU--------CCGCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 40437 | 0.71 | 0.304922 |
Target: 5'- cGGcaGCGGCCCCG--UAGGCGGGugcGGCa -3' miRNA: 3'- aCC--CGCCGGGGCcaGUCCGCCCu--UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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