miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 3' -63.6 NC_006146.1 + 40437 0.71 0.304922
Target:  5'- cGGcaGCGGCCCCG--UAGGCGGGugcGGCa -3'
miRNA:   3'- aCC--CGCCGGGGCcaGUCCGCCCu--UUG- -5'
29017 3' -63.6 NC_006146.1 + 167890 0.71 0.304922
Target:  5'- gGGGCGGCCCgGGgaccCucGCGGGGGc- -3'
miRNA:   3'- aCCCGCCGGGgCCa---GucCGCCCUUug -5'
29017 3' -63.6 NC_006146.1 + 38953 0.71 0.304922
Target:  5'- aGGGUGGCCuuGGcaucCGGGUGGGcccccAGACu -3'
miRNA:   3'- aCCCGCCGGggCCa---GUCCGCCC-----UUUG- -5'
29017 3' -63.6 NC_006146.1 + 169754 0.71 0.304922
Target:  5'- gGGGCGGCCCgGGgaccCucGCGGGGGc- -3'
miRNA:   3'- aCCCGCCGGGgCCa---GucCGCCCUUug -5'
29017 3' -63.6 NC_006146.1 + 67461 0.71 0.307595
Target:  5'- aGGuGCGcaugugcuccgcgaaGCCCCGGUcCAGGagcgaGGGGAGCa -3'
miRNA:   3'- aCC-CGC---------------CGGGGCCA-GUCCg----CCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 56800 0.71 0.311638
Target:  5'- cGcGGCGGCCguCUGG-CGGGCGGGGc-- -3'
miRNA:   3'- aC-CCGCCGG--GGCCaGUCCGCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 72192 0.71 0.325405
Target:  5'- aGGacGCGGCggCCGGaUGGGCGGGAGACc -3'
miRNA:   3'- aCC--CGCCGg-GGCCaGUCCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 144509 0.71 0.332457
Target:  5'- gGGGUGGCCggGGagGGGUGGGGAGu -3'
miRNA:   3'- aCCCGCCGGggCCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 141431 0.71 0.332457
Target:  5'- gGGGUGGCCggGGagGGGUGGGGAGu -3'
miRNA:   3'- aCCCGCCGGggCCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 156820 0.71 0.332457
Target:  5'- gGGGUGGCCggGGagGGGUGGGGAGu -3'
miRNA:   3'- aCCCGCCGGggCCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 147587 0.71 0.332457
Target:  5'- gGGGUGGCCggGGagGGGUGGGGAGu -3'
miRNA:   3'- aCCCGCCGGggCCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 150665 0.71 0.332457
Target:  5'- gGGGUGGCCggGGagGGGUGGGGAGu -3'
miRNA:   3'- aCCCGCCGGggCCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 153742 0.71 0.332457
Target:  5'- gGGGUGGCCggGGagGGGUGGGGAGu -3'
miRNA:   3'- aCCCGCCGGggCCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 84387 0.71 0.332457
Target:  5'- cGGGCGGCCaucauggccuCCGGUaggCAGGUGGuuGAACa -3'
miRNA:   3'- aCCCGCCGG----------GGCCA---GUCCGCCc-UUUG- -5'
29017 3' -63.6 NC_006146.1 + 54996 0.71 0.338178
Target:  5'- gGGGUGGCcggaagcccCCCGGgcgggaugggggCGGGCGGGAu-- -3'
miRNA:   3'- aCCCGCCG---------GGGCCa-----------GUCCGCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 123035 0.71 0.339619
Target:  5'- cGaGGCGGCCCaGGUcCGGGCGcuGGAGGa -3'
miRNA:   3'- aC-CCGCCGGGgCCA-GUCCGC--CCUUUg -5'
29017 3' -63.6 NC_006146.1 + 169285 0.7 0.354278
Target:  5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3'
miRNA:   3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5'
29017 3' -63.6 NC_006146.1 + 170216 0.7 0.354278
Target:  5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3'
miRNA:   3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5'
29017 3' -63.6 NC_006146.1 + 167421 0.7 0.354278
Target:  5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3'
miRNA:   3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5'
29017 3' -63.6 NC_006146.1 + 168353 0.7 0.354278
Target:  5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3'
miRNA:   3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.