miRNA display CGI


Results 21 - 40 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 3' -63.6 NC_006146.1 + 144799 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 44557 0.66 0.57046
Target:  5'- gGGGCcggGGCUCCGGguggCuGGC-GGAAAUg -3'
miRNA:   3'- aCCCG---CCGGGGCCa---GuCCGcCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 147877 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 150955 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 154033 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 157111 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 137976 0.66 0.569504
Target:  5'- cGGGCcucccggGGgCCCGGcgGGGUGGGggGu -3'
miRNA:   3'- aCCCG-------CCgGGGCCagUCCGCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 53187 0.66 0.560918
Target:  5'- cGGccuCGGCCCCGGcCuuGGgGGGcgGCg -3'
miRNA:   3'- aCCc--GCCGGGGCCaGu-CCgCCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 154648 0.66 0.559967
Target:  5'- uUGGcGCGcuGCCgCCGGcugCAccgugguGGCGGGggGCg -3'
miRNA:   3'- -ACC-CGC--CGG-GGCCa--GU-------CCGCCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 32871 0.66 0.559016
Target:  5'- cGGGCGGCgcgagguCCCugccuggcaccagGGUCcGGCuGGggGCg -3'
miRNA:   3'- aCCCGCCG-------GGG-------------CCAGuCCGcCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 36779 0.67 0.551422
Target:  5'- gGGGUGGCCCUaGGUguUAGGaGGGGc-- -3'
miRNA:   3'- aCCCGCCGGGG-CCA--GUCCgCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 92326 0.67 0.551422
Target:  5'- gGGGCGGgCCCGGcCugGGGCagcugauaugGGGcgGCu -3'
miRNA:   3'- aCCCGCCgGGGCCaG--UCCG----------CCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 136701 0.67 0.550475
Target:  5'- cGGGCGGCgcgagguCCCugccuggcccagGGUCcGGCuGGggGCg -3'
miRNA:   3'- aCCCGCCG-------GGG------------CCAGuCCGcCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 45414 0.67 0.541974
Target:  5'- gUGGGCcagcgcgaGGCCCCGGcCGGGUugaaGuGGAACu -3'
miRNA:   3'- -ACCCG--------CCGGGGCCaGUCCGc---C-CUUUG- -5'
29017 3' -63.6 NC_006146.1 + 154854 0.67 0.541974
Target:  5'- aUGGGCGGUCggaaUCGuacGUCAGGUagagcccgucGGGggGCa -3'
miRNA:   3'- -ACCCGCCGG----GGC---CAGUCCG----------CCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 148506 0.67 0.541974
Target:  5'- -cGGUGGaCCCCGGggccaGGGUGGaGAGCa -3'
miRNA:   3'- acCCGCC-GGGGCCag---UCCGCCcUUUG- -5'
29017 3' -63.6 NC_006146.1 + 147061 0.67 0.541974
Target:  5'- aUGGGCcaGGUCCCGGcguagggaaAGGCcaGGGAGAg -3'
miRNA:   3'- -ACCCG--CCGGGGCCag-------UCCG--CCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 43179 0.67 0.541974
Target:  5'- cGGGCccaGCCCCa-UCAGcuccucGCGGGAGGCg -3'
miRNA:   3'- aCCCGc--CGGGGccAGUC------CGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 47054 0.67 0.541974
Target:  5'- gGGGcCGGUCgCCGGUgucGGUGaGGggGCg -3'
miRNA:   3'- aCCC-GCCGG-GGCCAgu-CCGC-CCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 161752 0.67 0.541032
Target:  5'- gGuGGCGGCUgaGGUCcgagggggcgccuGGGCGGGGGc- -3'
miRNA:   3'- aC-CCGCCGGggCCAG-------------UCCGCCCUUug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.