miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 3' -63.6 NC_006146.1 + 159856 0.67 0.532581
Target:  5'- gUGGGUGGUuagaaaugcuuUCagaGGUCGcGCGGGAGACc -3'
miRNA:   3'- -ACCCGCCG-----------GGg--CCAGUcCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 59601 0.67 0.532581
Target:  5'- aGGGCGGCgucCCCcGUCAGGUccuuGaGGAAAa -3'
miRNA:   3'- aCCCGCCG---GGGcCAGUCCG----C-CCUUUg -5'
29017 3' -63.6 NC_006146.1 + 157831 0.67 0.53258
Target:  5'- cGcGCuGGCCCCGGagGGGaCGGGcaccGAGCg -3'
miRNA:   3'- aCcCG-CCGGGGCCagUCC-GCCC----UUUG- -5'
29017 3' -63.6 NC_006146.1 + 66543 0.67 0.529774
Target:  5'- aGGGgGGCCCCGaugucuuugaucuuGUggcgCAGGCGGcGcAGGCa -3'
miRNA:   3'- aCCCgCCGGGGC--------------CA----GUCCGCC-C-UUUG- -5'
29017 3' -63.6 NC_006146.1 + 170494 0.67 0.524177
Target:  5'- cGGGgGGCuucCCCGGacccccagcgcgcggCGGGCGGGGc-- -3'
miRNA:   3'- aCCCgCCG---GGGCCa--------------GUCCGCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 155869 0.67 0.523246
Target:  5'- -cGGCgGGCCCUGGcCAGGCGccccucccuGGcAAACa -3'
miRNA:   3'- acCCG-CCGGGGCCaGUCCGC---------CC-UUUG- -5'
29017 3' -63.6 NC_006146.1 + 137812 0.67 0.522316
Target:  5'- cGGG-GGuCCgCCGGUCcggugcaccuggaAGGCaGGGggGCu -3'
miRNA:   3'- aCCCgCC-GG-GGCCAG-------------UCCG-CCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 168541 0.67 0.513975
Target:  5'- cUGGG-GGCCUCGGgggCGGaGgGGGggGu -3'
miRNA:   3'- -ACCCgCCGGGGCCa--GUC-CgCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 169473 0.67 0.513975
Target:  5'- cUGGG-GGCCUCGGgggCGGaGgGGGggGu -3'
miRNA:   3'- -ACCCgCCGGGGCCa--GUC-CgCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 170404 0.67 0.513975
Target:  5'- cUGGG-GGCCUCGGgggCGGaGgGGGggGu -3'
miRNA:   3'- -ACCCgCCGGGGCCa--GUC-CgCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 39270 0.67 0.513975
Target:  5'- cGGGUgugGGCCCCGGacucgagacggCAGGUGGcagcaGAGGCc -3'
miRNA:   3'- aCCCG---CCGGGGCCa----------GUCCGCC-----CUUUG- -5'
29017 3' -63.6 NC_006146.1 + 167609 0.67 0.513975
Target:  5'- cUGGG-GGCCUCGGgggCGGaGgGGGggGu -3'
miRNA:   3'- -ACCCgCCGGGGCCa--GUC-CgCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 49081 0.67 0.513052
Target:  5'- aGGGCugaGGCUCCGGcuguggcUCAGGCGGc---- -3'
miRNA:   3'- aCCCG---CCGGGGCC-------AGUCCGCCcuuug -5'
29017 3' -63.6 NC_006146.1 + 169563 0.67 0.511207
Target:  5'- cGGGgGGCuucCCCGGggcccgagcgcgcgUCGGGUGGGGc-- -3'
miRNA:   3'- aCCCgCCG---GGGCC--------------AGUCCGCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 167698 0.67 0.511207
Target:  5'- cGGGgGGCuucCCCGGggcccgagcgcgcgUCGGGUGGGGc-- -3'
miRNA:   3'- aCCCgCCG---GGGCC--------------AGUCCGCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 161432 0.67 0.508446
Target:  5'- gGGuGUGGCCCCGcGggaacccaaggcgcgUgGGGCGGGuAGGCu -3'
miRNA:   3'- aCC-CGCCGGGGC-C---------------AgUCCGCCC-UUUG- -5'
29017 3' -63.6 NC_006146.1 + 51571 0.67 0.504773
Target:  5'- cUGGGC-GCCgCCGGgagGGGCccgGGGGAGCc -3'
miRNA:   3'- -ACCCGcCGG-GGCCag-UCCG---CCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 101976 0.67 0.504773
Target:  5'- cUGGGCccaGGCCCCGGUCucguccauuuugAGcGCGGuGGc-- -3'
miRNA:   3'- -ACCCG---CCGGGGCCAG------------UC-CGCC-CUuug -5'
29017 3' -63.6 NC_006146.1 + 40720 0.67 0.504772
Target:  5'- cGGGUcucaGGUCCgGG-CAGGCGGGcccguGCu -3'
miRNA:   3'- aCCCG----CCGGGgCCaGUCCGCCCuu---UG- -5'
29017 3' -63.6 NC_006146.1 + 4223 0.67 0.504772
Target:  5'- gUGGucaCGGCCUCGG-CAcGCGGGGAAUu -3'
miRNA:   3'- -ACCc--GCCGGGGCCaGUcCGCCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.