miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 3' -63.6 NC_006146.1 + 4223 0.67 0.504772
Target:  5'- gUGGucaCGGCCUCGG-CAcGCGGGGAAUu -3'
miRNA:   3'- -ACCc--GCCGGGGCCaGUcCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 9899 0.69 0.44256
Target:  5'- -aGGCGGUgaCGGcCAGGCaGGAGGCg -3'
miRNA:   3'- acCCGCCGggGCCaGUCCGcCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 14343 0.66 0.618638
Target:  5'- aGGGCcguugcGGCCCUgcugguggGGUCGGGUcccGGGAu-- -3'
miRNA:   3'- aCCCG------CCGGGG--------CCAGUCCG---CCCUuug -5'
29017 3' -63.6 NC_006146.1 + 14830 0.68 0.468716
Target:  5'- aGGGCacGGUCUCGGgccCGGggccGCGGGAGGCc -3'
miRNA:   3'- aCCCG--CCGGGGCCa--GUC----CGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 15950 0.66 0.59833
Target:  5'- cUGGGUGGCUgggcaggCCGGUCucGGGUcuGGGGGu- -3'
miRNA:   3'- -ACCCGCCGG-------GGCCAG--UCCG--CCCUUug -5'
29017 3' -63.6 NC_006146.1 + 17697 0.7 0.369377
Target:  5'- cGGGCGGCCCguggCGGcCAaGCgccuGGGGGACg -3'
miRNA:   3'- aCCCGCCGGG----GCCaGUcCG----CCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 23948 0.8 0.088299
Target:  5'- aGGGCGGCgacuuucccCCCgGGUCGGGUGGGGGAg -3'
miRNA:   3'- aCCCGCCG---------GGG-CCAGUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 24049 0.66 0.608959
Target:  5'- gGGugacGCGGCCCCGaGcCAGGCccGGGcucuACg -3'
miRNA:   3'- aCC----CGCCGGGGC-CaGUCCG--CCCuu--UG- -5'
29017 3' -63.6 NC_006146.1 + 24085 0.66 0.618638
Target:  5'- cUGGcGCGGCCUCgccugggacgcgGGUCgaGGGCGGcuGGCa -3'
miRNA:   3'- -ACC-CGCCGGGG------------CCAG--UCCGCCcuUUG- -5'
29017 3' -63.6 NC_006146.1 + 26201 0.68 0.495642
Target:  5'- gGGGCGGCCUgGGaaccaagacCAGGUcguGGaGAAGCa -3'
miRNA:   3'- aCCCGCCGGGgCCa--------GUCCG---CC-CUUUG- -5'
29017 3' -63.6 NC_006146.1 + 27349 0.66 0.618638
Target:  5'- cGGGUGGCg-CGGcaAGGCcGGGggGCg -3'
miRNA:   3'- aCCCGCCGggGCCagUCCG-CCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 32871 0.66 0.559016
Target:  5'- cGGGCGGCgcgagguCCCugccuggcaccagGGUCcGGCuGGggGCg -3'
miRNA:   3'- aCCCGCCG-------GGG-------------CCAGuCCGcCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 33111 0.7 0.384911
Target:  5'- cGGGUGGCCgCCGG-CGGGUucgccGGGccGCu -3'
miRNA:   3'- aCCCGCCGG-GGCCaGUCCG-----CCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 33186 0.68 0.47761
Target:  5'- cGGGUaGGCCCgGG-CAcccccGGgGGGAGGCc -3'
miRNA:   3'- aCCCG-CCGGGgCCaGU-----CCgCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 33235 0.7 0.384911
Target:  5'- cGGGUGGCCgCCGG-CGGGUccgccGGGccGCu -3'
miRNA:   3'- aCCCGCCGG-GGCCaGUCCG-----CCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 33380 0.69 0.425588
Target:  5'- cGGGCcgcuGCCCCGcucCGGGUGGGggGu -3'
miRNA:   3'- aCCCGc---CGGGGCca-GUCCGCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 34145 0.7 0.384911
Target:  5'- cGGGCcucccggaGCCCCGGcgaGGGUGGGggGu -3'
miRNA:   3'- aCCCGc-------CGGGGCCag-UCCGCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 36779 0.67 0.551422
Target:  5'- gGGGUGGCCCUaGGUguUAGGaGGGGc-- -3'
miRNA:   3'- aCCCGCCGGGG-CCA--GUCCgCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 38953 0.71 0.304922
Target:  5'- aGGGUGGCCuuGGcaucCGGGUGGGcccccAGACu -3'
miRNA:   3'- aCCCGCCGGggCCa---GUCCGCCC-----UUUG- -5'
29017 3' -63.6 NC_006146.1 + 39270 0.67 0.513975
Target:  5'- cGGGUgugGGCCCCGGacucgagacggCAGGUGGcagcaGAGGCc -3'
miRNA:   3'- aCCCG---CCGGGGCCa----------GUCCGCC-----CUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.