miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 3' -63.6 NC_006146.1 + 39832 0.7 0.377091
Target:  5'- -cGGCGGCCUCGGcCGcacagugggccGGCGGGGGc- -3'
miRNA:   3'- acCCGCCGGGGCCaGU-----------CCGCCCUUug -5'
29017 3' -63.6 NC_006146.1 + 39893 0.68 0.459908
Target:  5'- cUGaGCGGCCUgCGG---GGCGGGAAACg -3'
miRNA:   3'- -ACcCGCCGGG-GCCaguCCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 39997 0.74 0.20691
Target:  5'- gUGGGUGGCCcggcagccuuugaCCGGUCAGaCGGGGcAACu -3'
miRNA:   3'- -ACCCGCCGG-------------GGCCAGUCcGCCCU-UUG- -5'
29017 3' -63.6 NC_006146.1 + 40437 0.71 0.304922
Target:  5'- cGGcaGCGGCCCCG--UAGGCGGGugcGGCa -3'
miRNA:   3'- aCC--CGCCGGGGCcaGUCCGCCCu--UUG- -5'
29017 3' -63.6 NC_006146.1 + 40720 0.67 0.504772
Target:  5'- cGGGUcucaGGUCCgGG-CAGGCGGGcccguGCu -3'
miRNA:   3'- aCCCG----CCGGGgCCaGUCCGCCCuu---UG- -5'
29017 3' -63.6 NC_006146.1 + 41052 0.74 0.217299
Target:  5'- cGcGGCGGCCCUGGgggccUCGGGguggaGGGAGGCc -3'
miRNA:   3'- aC-CCGCCGGGGCC-----AGUCCg----CCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 42851 0.69 0.400872
Target:  5'- aGGGCcgccaGGCCCacgcgcaGGUUccacuGGUGGGAGGCg -3'
miRNA:   3'- aCCCG-----CCGGGg------CCAGu----CCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 43179 0.67 0.541974
Target:  5'- cGGGCccaGCCCCa-UCAGcuccucGCGGGAGGCg -3'
miRNA:   3'- aCCCGc--CGGGGccAGUC------CGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 43276 0.7 0.384912
Target:  5'- aGGGCGGCCUggaGGUCcGGCaGGugccuAGCg -3'
miRNA:   3'- aCCCGCCGGGg--CCAGuCCGcCCu----UUG- -5'
29017 3' -63.6 NC_006146.1 + 43483 0.67 0.503856
Target:  5'- -cGGCGGCCguugacaCCGGcUCcGGCGGcGggGCc -3'
miRNA:   3'- acCCGCCGG-------GGCC-AGuCCGCC-CuuUG- -5'
29017 3' -63.6 NC_006146.1 + 43597 0.74 0.212297
Target:  5'- gGGGCGGgaggCCgGGUCGGGuCGGGGGAa -3'
miRNA:   3'- aCCCGCCg---GGgCCAGUCC-GCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 44557 0.66 0.57046
Target:  5'- gGGGCcggGGCUCCGGguggCuGGC-GGAAAUg -3'
miRNA:   3'- aCCCG---CCGGGGCCa---GuCCGcCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 44750 0.84 0.044036
Target:  5'- cGGGCGGCugugguugucggggCCCGG-CGGGCGGGGAACc -3'
miRNA:   3'- aCCCGCCG--------------GGGCCaGUCCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 45414 0.67 0.541974
Target:  5'- gUGGGCcagcgcgaGGCCCCGGcCGGGUugaaGuGGAACu -3'
miRNA:   3'- -ACCCG--------CCGGGGCCaGUCCGc---C-CUUUG- -5'
29017 3' -63.6 NC_006146.1 + 46720 0.7 0.384911
Target:  5'- cGcGGCGGCUCCGaGgCGGGC-GGAGGCc -3'
miRNA:   3'- aC-CCGCCGGGGC-CaGUCCGcCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 47054 0.67 0.541974
Target:  5'- gGGGcCGGUCgCCGGUgucGGUGaGGggGCg -3'
miRNA:   3'- aCCC-GCCGG-GGCCAgu-CCGC-CCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 47880 0.66 0.618638
Target:  5'- cUGGGCcgccucGGCCUCGGUCAGcGCuccGAGAa -3'
miRNA:   3'- -ACCCG------CCGGGGCCAGUC-CGcc-CUUUg -5'
29017 3' -63.6 NC_006146.1 + 48636 0.66 0.618638
Target:  5'- gGGGCgGGCUCCGGgCGGGUGcccAGCg -3'
miRNA:   3'- aCCCG-CCGGGGCCaGUCCGCccuUUG- -5'
29017 3' -63.6 NC_006146.1 + 49081 0.67 0.513052
Target:  5'- aGGGCugaGGCUCCGGcuguggcUCAGGCGGc---- -3'
miRNA:   3'- aCCCG---CCGGGGCC-------AGUCCGCCcuuug -5'
29017 3' -63.6 NC_006146.1 + 51571 0.67 0.504773
Target:  5'- cUGGGC-GCCgCCGGgagGGGCccgGGGGAGCc -3'
miRNA:   3'- -ACCCGcCGG-GGCCag-UCCG---CCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.