miRNA display CGI


Results 1 - 20 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 3' -63.6 NC_006146.1 + 170494 0.67 0.524177
Target:  5'- cGGGgGGCuucCCCGGacccccagcgcgcggCGGGCGGGGc-- -3'
miRNA:   3'- aCCCgCCG---GGGCCa--------------GUCCGCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 170404 0.67 0.513975
Target:  5'- cUGGG-GGCCUCGGgggCGGaGgGGGggGu -3'
miRNA:   3'- -ACCCgCCGGGGCCa--GUC-CgCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 170216 0.7 0.354278
Target:  5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3'
miRNA:   3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5'
29017 3' -63.6 NC_006146.1 + 170158 0.68 0.477609
Target:  5'- cGcGGCGGCgCCGGcCGGGgGcugaGGggGCu -3'
miRNA:   3'- aC-CCGCCGgGGCCaGUCCgC----CCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 169754 0.71 0.304922
Target:  5'- gGGGCGGCCCgGGgaccCucGCGGGGGc- -3'
miRNA:   3'- aCCCGCCGGGgCCa---GucCGCCCUUug -5'
29017 3' -63.6 NC_006146.1 + 169563 0.67 0.511207
Target:  5'- cGGGgGGCuucCCCGGggcccgagcgcgcgUCGGGUGGGGc-- -3'
miRNA:   3'- aCCCgCCG---GGGCC--------------AGUCCGCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 169473 0.67 0.513975
Target:  5'- cUGGG-GGCCUCGGgggCGGaGgGGGggGu -3'
miRNA:   3'- -ACCCgCCGGGGCCa--GUC-CgCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 169285 0.7 0.354278
Target:  5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3'
miRNA:   3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5'
29017 3' -63.6 NC_006146.1 + 169227 0.68 0.477609
Target:  5'- cGcGGCGGCgCCGGcCGGGgGcugaGGggGCu -3'
miRNA:   3'- aC-CCGCCGgGGCCaGUCCgC----CCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 168822 0.71 0.304922
Target:  5'- gGGGCGGCCCgGGgaccCucGCGGGGGc- -3'
miRNA:   3'- aCCCGCCGGGgCCa---GucCGCCCUUug -5'
29017 3' -63.6 NC_006146.1 + 168541 0.67 0.513975
Target:  5'- cUGGG-GGCCUCGGgggCGGaGgGGGggGu -3'
miRNA:   3'- -ACCCgCCGGGGCCa--GUC-CgCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 168353 0.7 0.354278
Target:  5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3'
miRNA:   3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5'
29017 3' -63.6 NC_006146.1 + 168295 0.68 0.477609
Target:  5'- cGcGGCGGCgCCGGcCGGGgGcugaGGggGCu -3'
miRNA:   3'- aC-CCGCCGgGGCCaGUCCgC----CCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 167890 0.71 0.304922
Target:  5'- gGGGCGGCCCgGGgaccCucGCGGGGGc- -3'
miRNA:   3'- aCCCGCCGGGgCCa---GucCGCCCUUug -5'
29017 3' -63.6 NC_006146.1 + 167698 0.67 0.511207
Target:  5'- cGGGgGGCuucCCCGGggcccgagcgcgcgUCGGGUGGGGc-- -3'
miRNA:   3'- aCCCgCCG---GGGCC--------------AGUCCGCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 167609 0.67 0.513975
Target:  5'- cUGGG-GGCCUCGGgggCGGaGgGGGggGu -3'
miRNA:   3'- -ACCCgCCGGGGCCa--GUC-CgCCCuuUg -5'
29017 3' -63.6 NC_006146.1 + 167421 0.7 0.354278
Target:  5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3'
miRNA:   3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5'
29017 3' -63.6 NC_006146.1 + 167363 0.68 0.477609
Target:  5'- cGcGGCGGCgCCGGcCGGGgGcugaGGggGCu -3'
miRNA:   3'- aC-CCGCCGgGGCCaGUCCgC----CCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 166835 0.66 0.589654
Target:  5'- --cGCGGCCCgGGUCc-GCGuGGAGAUu -3'
miRNA:   3'- accCGCCGGGgCCAGucCGC-CCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 166675 0.73 0.249456
Target:  5'- gGGaGCGGUguggCCUGG-CAGGgGGGAGACg -3'
miRNA:   3'- aCC-CGCCG----GGGCCaGUCCgCCCUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.