miRNA display CGI


Results 21 - 40 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 3' -63.6 NC_006146.1 + 165600 0.66 0.57046
Target:  5'- --uGUGGCCCaaguGGUCAucggcGGUGGGAAAUg -3'
miRNA:   3'- accCGCCGGGg---CCAGU-----CCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 161752 0.67 0.541032
Target:  5'- gGuGGCGGCUgaGGUCcgagggggcgccuGGGCGGGGGc- -3'
miRNA:   3'- aC-CCGCCGGggCCAG-------------UCCGCCCUUug -5'
29017 3' -63.6 NC_006146.1 + 161432 0.67 0.508446
Target:  5'- gGGuGUGGCCCCGcGggaacccaaggcgcgUgGGGCGGGuAGGCu -3'
miRNA:   3'- aCC-CGCCGGGGC-C---------------AgUCCGCCC-UUUG- -5'
29017 3' -63.6 NC_006146.1 + 159856 0.67 0.532581
Target:  5'- gUGGGUGGUuagaaaugcuuUCagaGGUCGcGCGGGAGACc -3'
miRNA:   3'- -ACCCGCCG-----------GGg--CCAGUcCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 159432 0.8 0.075894
Target:  5'- cGGGUGGCUgaUGGUCgAGGCGGGGAACu -3'
miRNA:   3'- aCCCGCCGGg-GCCAG-UCCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 157831 0.67 0.53258
Target:  5'- cGcGCuGGCCCCGGagGGGaCGGGcaccGAGCg -3'
miRNA:   3'- aCcCG-CCGGGGCCagUCC-GCCC----UUUG- -5'
29017 3' -63.6 NC_006146.1 + 157549 0.68 0.472263
Target:  5'- aGGGCGGCuCCCcucugacauucuuugGGUUcaacgGGGCucagaGGGGAGCg -3'
miRNA:   3'- aCCCGCCG-GGG---------------CCAG-----UCCG-----CCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 157111 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 156820 0.71 0.332457
Target:  5'- gGGGUGGCCggGGagGGGUGGGGAGu -3'
miRNA:   3'- aCCCGCCGGggCCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 156686 0.68 0.47761
Target:  5'- gGGGCGGCUgggGGUCGGGCuggccugccaGGggGCa -3'
miRNA:   3'- aCCCGCCGGgg-CCAGUCCGc---------CCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 156509 0.66 0.599296
Target:  5'- cGGcguacGCGGCC-CGGagGGgaGCGGGAGGCg -3'
miRNA:   3'- aCC-----CGCCGGgGCCagUC--CGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 155957 0.69 0.423075
Target:  5'- gGaGGUGGCCCCGGgcgcaGGGCaaggcgaugggcgaGGGAAGg -3'
miRNA:   3'- aC-CCGCCGGGGCCag---UCCG--------------CCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 155869 0.67 0.523246
Target:  5'- -cGGCgGGCCCUGGcCAGGCGccccucccuGGcAAACa -3'
miRNA:   3'- acCCG-CCGGGGCCaGUCCGC---------CC-UUUG- -5'
29017 3' -63.6 NC_006146.1 + 154854 0.67 0.541974
Target:  5'- aUGGGCGGUCggaaUCGuacGUCAGGUagagcccgucGGGggGCa -3'
miRNA:   3'- -ACCCGCCGG----GGC---CAGUCCG----------CCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 154648 0.66 0.559967
Target:  5'- uUGGcGCGcuGCCgCCGGcugCAccgugguGGCGGGggGCg -3'
miRNA:   3'- -ACC-CGC--CGG-GGCCa--GU-------CCGCCCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 154471 0.68 0.472263
Target:  5'- aGGGCGGCuCCCcucugacauucuuugGGUUcaacgGGGCucagaGGGGAGCg -3'
miRNA:   3'- aCCCGCCG-GGG---------------CCAG-----UCCG-----CCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 154033 0.66 0.57046
Target:  5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3'
miRNA:   3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 153742 0.71 0.332457
Target:  5'- gGGGUGGCCggGGagGGGUGGGGAGu -3'
miRNA:   3'- aCCCGCCGGggCCagUCCGCCCUUUg -5'
29017 3' -63.6 NC_006146.1 + 153609 0.68 0.47761
Target:  5'- gGGGCGGCUgggGGUCGGGCuggccugccaGGggGCa -3'
miRNA:   3'- aCCCGCCGGgg-CCAGUCCGc---------CCuuUG- -5'
29017 3' -63.6 NC_006146.1 + 152879 0.69 0.423075
Target:  5'- gGaGGUGGCCCCGGgcgcaGGGCaaggcgaugggcgaGGGAAGg -3'
miRNA:   3'- aC-CCGCCGGGGCCag---UCCG--------------CCCUUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.