miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 3' -63.6 NC_006146.1 + 54249 1.09 0.000688
Target:  5'- cUGGGCGGCCCCGGUCAGGCGGGAAACg -3'
miRNA:   3'- -ACCCGCCGGGGCCAGUCCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 54996 0.71 0.338178
Target:  5'- gGGGUGGCcggaagcccCCCGGgcgggaugggggCGGGCGGGAu-- -3'
miRNA:   3'- aCCCGCCG---------GGGCCa-----------GUCCGCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 168353 0.7 0.354278
Target:  5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3'
miRNA:   3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5'
29017 3' -63.6 NC_006146.1 + 47880 0.66 0.618638
Target:  5'- cUGGGCcgccucGGCCUCGGUCAGcGCuccGAGAa -3'
miRNA:   3'- -ACCCG------CCGGGGCCAGUC-CGcc-CUUUg -5'
29017 3' -63.6 NC_006146.1 + 39997 0.74 0.20691
Target:  5'- gUGGGUGGCCcggcagccuuugaCCGGUCAGaCGGGGcAACu -3'
miRNA:   3'- -ACCCGCCGG-------------GGCCAGUCcGCCCU-UUG- -5'
29017 3' -63.6 NC_006146.1 + 51933 0.73 0.227604
Target:  5'- cGGGCGGCCCCGGU---GCGGucuGCg -3'
miRNA:   3'- aCCCGCCGGGGCCAgucCGCCcuuUG- -5'
29017 3' -63.6 NC_006146.1 + 129863 0.73 0.243835
Target:  5'- aGGGCcGCCgCGGaCGGGgGGGAGAUg -3'
miRNA:   3'- aCCCGcCGGgGCCaGUCCgCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 166675 0.73 0.249456
Target:  5'- gGGaGCGGUguggCCUGG-CAGGgGGGAGACg -3'
miRNA:   3'- aCC-CGCCG----GGGCCaGUCCgCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 38953 0.71 0.304922
Target:  5'- aGGGUGGCCuuGGcaucCGGGUGGGcccccAGACu -3'
miRNA:   3'- aCCCGCCGGggCCa---GUCCGCCC-----UUUG- -5'
29017 3' -63.6 NC_006146.1 + 56800 0.71 0.311638
Target:  5'- cGcGGCGGCCguCUGG-CGGGCGGGGc-- -3'
miRNA:   3'- aC-CCGCCGG--GGCCaGUCCGCCCUuug -5'
29017 3' -63.6 NC_006146.1 + 168822 0.71 0.304922
Target:  5'- gGGGCGGCCCgGGgaccCucGCGGGGGc- -3'
miRNA:   3'- aCCCGCCGGGgCCa---GucCGCCCUUug -5'
29017 3' -63.6 NC_006146.1 + 129117 0.72 0.298318
Target:  5'- aGGGCcugagagcgGGCgCCCGGgcgCAgggccuccGGCGGGAAGCc -3'
miRNA:   3'- aCCCG---------CCG-GGGCCa--GU--------CCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 44750 0.84 0.044036
Target:  5'- cGGGCGGCugugguugucggggCCCGG-CGGGCGGGGAACc -3'
miRNA:   3'- aCCCGCCG--------------GGGCCaGUCCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 169754 0.71 0.304922
Target:  5'- gGGGCGGCCCgGGgaccCucGCGGGGGc- -3'
miRNA:   3'- aCCCGCCGGGgCCa---GucCGCCCUUug -5'
29017 3' -63.6 NC_006146.1 + 159432 0.8 0.075894
Target:  5'- cGGGUGGCUgaUGGUCgAGGCGGGGAACu -3'
miRNA:   3'- aCCCGCCGGg-GCCAG-UCCGCCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 54715 0.72 0.273011
Target:  5'- -cGGCgGGCCCgGGUCAGGgcggccgagGGGAGACu -3'
miRNA:   3'- acCCG-CCGGGgCCAGUCCg--------CCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 67461 0.71 0.307595
Target:  5'- aGGuGCGcaugugcuccgcgaaGCCCCGGUcCAGGagcgaGGGGAGCa -3'
miRNA:   3'- aCC-CGC---------------CGGGGCCA-GUCCg----CCCUUUG- -5'
29017 3' -63.6 NC_006146.1 + 167421 0.7 0.354278
Target:  5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3'
miRNA:   3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5'
29017 3' -63.6 NC_006146.1 + 68109 0.75 0.193272
Target:  5'- gUGGGCGGCCagCCGGUCc-GCGGuGAGCg -3'
miRNA:   3'- -ACCCGCCGG--GGCCAGucCGCCcUUUG- -5'
29017 3' -63.6 NC_006146.1 + 57341 0.73 0.238321
Target:  5'- gGGGCggGGCCCCGGgugUCGGuGaGGGAGGCu -3'
miRNA:   3'- aCCCG--CCGGGGCC---AGUC-CgCCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.