Results 21 - 40 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29017 | 3' | -63.6 | NC_006146.1 | + | 128516 | 0.7 | 0.37709 |
Target: 5'- gGGGUGGCCCUGGggcgccccUCgcccacccuggcGGcGCGGGAGAUc -3' miRNA: 3'- aCCCGCCGGGGCC--------AG------------UC-CGCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 168353 | 0.7 | 0.354278 |
Target: 5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3' miRNA: 3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 129117 | 0.72 | 0.298318 |
Target: 5'- aGGGCcugagagcgGGCgCCCGGgcgCAgggccuccGGCGGGAAGCc -3' miRNA: 3'- aCCCG---------CCG-GGGCCa--GU--------CCGCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 68109 | 0.75 | 0.193272 |
Target: 5'- gUGGGCGGCCagCCGGUCc-GCGGuGAGCg -3' miRNA: 3'- -ACCCGCCGG--GGCCAGucCGCCcUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 53844 | 0.69 | 0.425588 |
Target: 5'- aGGuGUGGUCCCGG--AGGCGGuAGGCg -3' miRNA: 3'- aCC-CGCCGGGGCCagUCCGCCcUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 128202 | 0.69 | 0.392041 |
Target: 5'- gGGGCgccgcGGCgCCGGgccagacgcucuuUCGGcGCGGGGAGCu -3' miRNA: 3'- aCCCG-----CCGgGGCC-------------AGUC-CGCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 54996 | 0.71 | 0.338178 |
Target: 5'- gGGGUGGCcggaagcccCCCGGgcgggaugggggCGGGCGGGAu-- -3' miRNA: 3'- aCCCGCCG---------GGGCCa-----------GUCCGCCCUuug -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 159432 | 0.8 | 0.075894 |
Target: 5'- cGGGUGGCUgaUGGUCgAGGCGGGGAACu -3' miRNA: 3'- aCCCGCCGGg-GCCAG-UCCGCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 34145 | 0.7 | 0.384911 |
Target: 5'- cGGGCcucccggaGCCCCGGcgaGGGUGGGggGu -3' miRNA: 3'- aCCCGc-------CGGGGCCag-UCCGCCCuuUg -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 44750 | 0.84 | 0.044036 |
Target: 5'- cGGGCGGCugugguugucggggCCCGG-CGGGCGGGGAACc -3' miRNA: 3'- aCCCGCCG--------------GGGCCaGUCCGCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 167421 | 0.7 | 0.354278 |
Target: 5'- gGGGCcagcgcggGGUCCCGGggcggggggUCGGGCGGGcauGCu -3' miRNA: 3'- aCCCG--------CCGGGGCC---------AGUCCGCCCuu-UG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 46720 | 0.7 | 0.384911 |
Target: 5'- cGcGGCGGCUCCGaGgCGGGC-GGAGGCc -3' miRNA: 3'- aC-CCGCCGGGGC-CaGUCCGcCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 169754 | 0.71 | 0.304922 |
Target: 5'- gGGGCGGCCCgGGgaccCucGCGGGGGc- -3' miRNA: 3'- aCCCGCCGGGgCCa---GucCGCCCUUug -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 38953 | 0.71 | 0.304922 |
Target: 5'- aGGGUGGCCuuGGcaucCGGGUGGGcccccAGACu -3' miRNA: 3'- aCCCGCCGGggCCa---GUCCGCCC-----UUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 129863 | 0.73 | 0.243835 |
Target: 5'- aGGGCcGCCgCGGaCGGGgGGGAGAUg -3' miRNA: 3'- aCCCGcCGGgGCCaGUCCgCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 39997 | 0.74 | 0.20691 |
Target: 5'- gUGGGUGGCCcggcagccuuugaCCGGUCAGaCGGGGcAACu -3' miRNA: 3'- -ACCCGCCGG-------------GGCCAGUCcGCCCU-UUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 52080 | 0.68 | 0.477609 |
Target: 5'- cGGGagGGCUgCGGUCGGGggcCGGcGAGGCc -3' miRNA: 3'- aCCCg-CCGGgGCCAGUCC---GCC-CUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 33380 | 0.69 | 0.425588 |
Target: 5'- cGGGCcgcuGCCCCGcucCGGGUGGGggGu -3' miRNA: 3'- aCCCGc---CGGGGCca-GUCCGCCCuuUg -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 53033 | 0.69 | 0.416419 |
Target: 5'- cUGGccGCGGCCgCCgccgagagguaagGGgggCGGGUGGGGAACa -3' miRNA: 3'- -ACC--CGCCGG-GG-------------CCa--GUCCGCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 57041 | 0.69 | 0.409009 |
Target: 5'- gGGGCGaaGCCgCCagGGUUgAGGCGGGAGGg -3' miRNA: 3'- aCCCGC--CGG-GG--CCAG-UCCGCCCUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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