Results 1 - 20 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29017 | 3' | -63.6 | NC_006146.1 | + | 161752 | 0.67 | 0.541032 |
Target: 5'- gGuGGCGGCUgaGGUCcgagggggcgccuGGGCGGGGGc- -3' miRNA: 3'- aC-CCGCCGGggCCAG-------------UCCGCCCUUug -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 141721 | 0.66 | 0.57046 |
Target: 5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3' miRNA: 3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 61935 | 0.66 | 0.57046 |
Target: 5'- gGGGCuccagGGCCCUGGUCca-CGGGAcgguGCa -3' miRNA: 3'- aCCCG-----CCGGGGCCAGuccGCCCUu---UG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 44557 | 0.66 | 0.57046 |
Target: 5'- gGGGCcggGGCUCCGGguggCuGGC-GGAAAUg -3' miRNA: 3'- aCCCG---CCGGGGCCa---GuCCGcCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 32871 | 0.66 | 0.559016 |
Target: 5'- cGGGCGGCgcgagguCCCugccuggcaccagGGUCcGGCuGGggGCg -3' miRNA: 3'- aCCCGCCG-------GGG-------------CCAGuCCGcCCuuUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 92326 | 0.67 | 0.551422 |
Target: 5'- gGGGCGGgCCCGGcCugGGGCagcugauaugGGGcgGCu -3' miRNA: 3'- aCCCGCCgGGGCCaG--UCCG----------CCCuuUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 36779 | 0.67 | 0.551422 |
Target: 5'- gGGGUGGCCCUaGGUguUAGGaGGGGc-- -3' miRNA: 3'- aCCCGCCGGGG-CCA--GUCCgCCCUuug -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 136701 | 0.67 | 0.550475 |
Target: 5'- cGGGCGGCgcgagguCCCugccuggcccagGGUCcGGCuGGggGCg -3' miRNA: 3'- aCCCGCCG-------GGG------------CCAGuCCGcCCuuUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 43179 | 0.67 | 0.541974 |
Target: 5'- cGGGCccaGCCCCa-UCAGcuccucGCGGGAGGCg -3' miRNA: 3'- aCCCGc--CGGGGccAGUC------CGCCCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 144799 | 0.66 | 0.57046 |
Target: 5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3' miRNA: 3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 147877 | 0.66 | 0.57046 |
Target: 5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3' miRNA: 3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 150955 | 0.66 | 0.57046 |
Target: 5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3' miRNA: 3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 56223 | 0.66 | 0.618638 |
Target: 5'- aGGGCcugGGUCUgGGUCAGGUauacucucuGGAGACc -3' miRNA: 3'- aCCCG---CCGGGgCCAGUCCGc--------CCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 24085 | 0.66 | 0.618638 |
Target: 5'- cUGGcGCGGCCUCgccugggacgcgGGUCgaGGGCGGcuGGCa -3' miRNA: 3'- -ACC-CGCCGGGG------------CCAG--UCCGCCcuUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 14343 | 0.66 | 0.618638 |
Target: 5'- aGGGCcguugcGGCCCUgcugguggGGUCGGGUcccGGGAu-- -3' miRNA: 3'- aCCCG------CCGGGG--------CCAGUCCG---CCCUuug -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 24049 | 0.66 | 0.608959 |
Target: 5'- gGGugacGCGGCCCCGaGcCAGGCccGGGcucuACg -3' miRNA: 3'- aCC----CGCCGGGGC-CaGUCCG--CCCuu--UG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 139359 | 0.66 | 0.606058 |
Target: 5'- gGGGCGGCgCCGGgggGGGUGccugcuguuuaguaGGAGAa -3' miRNA: 3'- aCCCGCCGgGGCCag-UCCGC--------------CCUUUg -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 166835 | 0.66 | 0.589654 |
Target: 5'- --cGCGGCCCgGGUCc-GCGuGGAGAUu -3' miRNA: 3'- accCGCCGGGgCCAGucCGC-CCUUUG- -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 157111 | 0.66 | 0.57046 |
Target: 5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3' miRNA: 3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5' |
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29017 | 3' | -63.6 | NC_006146.1 | + | 154033 | 0.66 | 0.57046 |
Target: 5'- aGGGgGGCCggggaGGg-AGGCGGGGAGg -3' miRNA: 3'- aCCCgCCGGgg---CCagUCCGCCCUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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