miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 5' -56.6 NC_006146.1 + 89381 0.66 0.921818
Target:  5'- aGGUCUCGUggUGGGcACCgaGGGGAGCa- -3'
miRNA:   3'- cCCAGAGCGg-ACCU-UGG--UCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 47680 0.66 0.921818
Target:  5'- aGGGUCUCGUggaUGGAggACUuGGgcGUGGa -3'
miRNA:   3'- -CCCAGAGCGg--ACCU--UGGuCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 169251 0.66 0.91625
Target:  5'- aGGGggCUC-CCgagggcGGGGCCGGGGccuGGCGGg -3'
miRNA:   3'- -CCCa-GAGcGGa-----CCUUGGUCCU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 168319 0.66 0.91625
Target:  5'- aGGGggCUC-CCgagggcGGGGCCGGGGccuGGCGGg -3'
miRNA:   3'- -CCCa-GAGcGGa-----CCUUGGUCCU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 170182 0.66 0.91625
Target:  5'- aGGGggCUC-CCgagggcGGGGCCGGGGccuGGCGGg -3'
miRNA:   3'- -CCCa-GAGcGGa-----CCUUGGUCCU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 167387 0.66 0.91625
Target:  5'- aGGGggCUC-CCgagggcGGGGCCGGGGccuGGCGGg -3'
miRNA:   3'- -CCCa-GAGcGGa-----CCUUGGUCCU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 89974 0.66 0.91625
Target:  5'- uGGGcCUgG-CUGG-GCCGGGAGGCu- -3'
miRNA:   3'- -CCCaGAgCgGACCuUGGUCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 48705 0.66 0.91625
Target:  5'- gGGGaCUaCGUCUGGGAgUgAGGAGGCa- -3'
miRNA:   3'- -CCCaGA-GCGGACCUU-GgUCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 98538 0.66 0.910453
Target:  5'- cGGGUUucgUCGCCgccagccGGu-CCAGGGcccaAGCGAa -3'
miRNA:   3'- -CCCAG---AGCGGa------CCuuGGUCCU----UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 168121 0.66 0.910453
Target:  5'- cGG-CgcgCGCCcGGGGucCCGGGggGCGGc -3'
miRNA:   3'- cCCaGa--GCGGaCCUU--GGUCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 169985 0.66 0.910453
Target:  5'- cGG-CgcgCGCCcGGGGucCCGGGggGCGGc -3'
miRNA:   3'- cCCaGa--GCGGaCCUU--GGUCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 167189 0.66 0.910453
Target:  5'- cGG-CgcgCGCCcGGGGucCCGGGggGCGGc -3'
miRNA:   3'- cCCaGa--GCGGaCCUU--GGUCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 169053 0.66 0.910453
Target:  5'- cGG-CgcgCGCCcGGGGucCCGGGggGCGGc -3'
miRNA:   3'- cCCaGa--GCGGaCCUU--GGUCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 76384 0.66 0.910453
Target:  5'- aGGG-CgCGCCgggggaGGGACCGGGGgcgccgacGGCGGc -3'
miRNA:   3'- -CCCaGaGCGGa-----CCUUGGUCCU--------UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 64233 0.66 0.910453
Target:  5'- --aUCUgCGCCUGG-GCCGGGgcGgGAg -3'
miRNA:   3'- cccAGA-GCGGACCuUGGUCCuuCgCU- -5'
29017 5' -56.6 NC_006146.1 + 131487 0.66 0.910453
Target:  5'- uGGGUCUggggUGCCagGGAucgACCGGGAaagGGCc- -3'
miRNA:   3'- -CCCAGA----GCGGa-CCU---UGGUCCU---UCGcu -5'
29017 5' -56.6 NC_006146.1 + 56207 0.66 0.908669
Target:  5'- cGGGUCUCGC--GGAcgagccgcgaGCCGuccagcggguccgcGGggGCGGa -3'
miRNA:   3'- -CCCAGAGCGgaCCU----------UGGU--------------CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 136740 0.66 0.906864
Target:  5'- gGGGgcgcaccccccaccCUCGCCggGGcuCCGGGAGGCc- -3'
miRNA:   3'- -CCCa-------------GAGCGGa-CCuuGGUCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 170437 0.66 0.904427
Target:  5'- cGGGgcccggCgcgUGCCggGGGACCcGGggGCGu -3'
miRNA:   3'- -CCCa-----Ga--GCGGa-CCUUGGuCCuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 157096 0.66 0.904427
Target:  5'- uGGGgagacaaGCUgaggGGGGCCGGGGAGgGAg -3'
miRNA:   3'- -CCCagag---CGGa---CCUUGGUCCUUCgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.