miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 5' -56.6 NC_006146.1 + 54286 0.99 0.013607
Target:  5'- aGGGUCUCGCCUGaGACCAGGAAGCGAc -3'
miRNA:   3'- -CCCAGAGCGGACcUUGGUCCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 139092 0.79 0.279226
Target:  5'- cGGGcCUCGCCUGGAGuuGGGuuGCGu -3'
miRNA:   3'- -CCCaGAGCGGACCUUggUCCuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 24091 0.77 0.342199
Target:  5'- cGGcCUCGCCUGGGACgCGGGucgaGGGCGGc -3'
miRNA:   3'- cCCaGAGCGGACCUUG-GUCC----UUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 157467 0.76 0.414801
Target:  5'- gGGGUCccuccggcUgGCCUGGGACCcgGGGAGGCa- -3'
miRNA:   3'- -CCCAG--------AgCGGACCUUGG--UCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 142077 0.76 0.414801
Target:  5'- gGGGUCccuccggcUgGCCUGGGACCcgGGGAGGCa- -3'
miRNA:   3'- -CCCAG--------AgCGGACCUUGG--UCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 145155 0.76 0.414801
Target:  5'- gGGGUCccuccggcUgGCCUGGGACCcgGGGAGGCa- -3'
miRNA:   3'- -CCCAG--------AgCGGACCUUGG--UCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 148233 0.76 0.414801
Target:  5'- gGGGUCccuccggcUgGCCUGGGACCcgGGGAGGCa- -3'
miRNA:   3'- -CCCAG--------AgCGGACCUUGG--UCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 151311 0.76 0.414801
Target:  5'- gGGGUCccuccggcUgGCCUGGGACCcgGGGAGGCa- -3'
miRNA:   3'- -CCCAG--------AgCGGACCUUGG--UCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 154389 0.76 0.414801
Target:  5'- gGGGUCccuccggcUgGCCUGGGACCcgGGGAGGCa- -3'
miRNA:   3'- -CCCAG--------AgCGGACCUUGG--UCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 123349 0.74 0.496116
Target:  5'- gGGGUCUCGCCgagGGAgcucuggcgcugGCCGGG-GGCc- -3'
miRNA:   3'- -CCCAGAGCGGa--CCU------------UGGUCCuUCGcu -5'
29017 5' -56.6 NC_006146.1 + 63833 0.72 0.583883
Target:  5'- aGGUCUUGCCgUGGcGCCGGGGAaUGAg -3'
miRNA:   3'- cCCAGAGCGG-ACCuUGGUCCUUcGCU- -5'
29017 5' -56.6 NC_006146.1 + 14836 0.72 0.603907
Target:  5'- cGGUCUCggGCCcGGGGCCgcGGGAGGcCGAg -3'
miRNA:   3'- cCCAGAG--CGGaCCUUGG--UCCUUC-GCU- -5'
29017 5' -56.6 NC_006146.1 + 124141 0.71 0.644139
Target:  5'- --aUC-CGCCcGGggUCGGGAGGCGAg -3'
miRNA:   3'- cccAGaGCGGaCCuuGGUCCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 169463 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 167599 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 170394 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 168531 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 150541 0.71 0.664231
Target:  5'- gGGGUCg-GgCUGGccuGCCAGGggGCa- -3'
miRNA:   3'- -CCCAGagCgGACCu--UGGUCCuuCGcu -5'
29017 5' -56.6 NC_006146.1 + 156696 0.71 0.664231
Target:  5'- gGGGUCg-GgCUGGccuGCCAGGggGCa- -3'
miRNA:   3'- -CCCAGagCgGACCu--UGGUCCuuCGcu -5'
29017 5' -56.6 NC_006146.1 + 153619 0.71 0.664231
Target:  5'- gGGGUCg-GgCUGGccuGCCAGGggGCa- -3'
miRNA:   3'- -CCCAGagCgGACCu--UGGUCCuuCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.