miRNA display CGI


Results 21 - 40 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 5' -56.6 NC_006146.1 + 150541 0.71 0.664231
Target:  5'- gGGGUCg-GgCUGGccuGCCAGGggGCa- -3'
miRNA:   3'- -CCCAGagCgGACCu--UGGUCCuuCGcu -5'
29017 5' -56.6 NC_006146.1 + 153619 0.71 0.664231
Target:  5'- gGGGUCg-GgCUGGccuGCCAGGggGCa- -3'
miRNA:   3'- -CCCAGagCgGACCu--UGGUCCuuCGcu -5'
29017 5' -56.6 NC_006146.1 + 154672 0.71 0.664231
Target:  5'- cGGGUCUUggGCCUGGGAguCCGGGGuguugAGCc- -3'
miRNA:   3'- -CCCAGAG--CGGACCUU--GGUCCU-----UCGcu -5'
29017 5' -56.6 NC_006146.1 + 156696 0.71 0.664231
Target:  5'- gGGGUCg-GgCUGGccuGCCAGGggGCa- -3'
miRNA:   3'- -CCCAGagCgGACCu--UGGUCCuuCGcu -5'
29017 5' -56.6 NC_006146.1 + 94639 0.71 0.674243
Target:  5'- cGGGUCcaugauggcCGCCcugGGGACCAcGAAGCGGu -3'
miRNA:   3'- -CCCAGa--------GCGGa--CCUUGGUcCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 151594 0.7 0.704046
Target:  5'- cGGGUCUUggGCCUGGGAgguCCGGGGuguugAGCc- -3'
miRNA:   3'- -CCCAGAG--CGGACCUU---GGUCCU-----UCGcu -5'
29017 5' -56.6 NC_006146.1 + 148516 0.7 0.704046
Target:  5'- cGGGUCUUggGCCUGGGAgguCCGGGGuguugAGCc- -3'
miRNA:   3'- -CCCAGAG--CGGACCUU---GGUCCU-----UCGcu -5'
29017 5' -56.6 NC_006146.1 + 145438 0.7 0.704046
Target:  5'- cGGGUCUUggGCCUGGGAgguCCGGGGuguugAGCc- -3'
miRNA:   3'- -CCCAGAG--CGGACCUU---GGUCCU-----UCGcu -5'
29017 5' -56.6 NC_006146.1 + 157749 0.7 0.704046
Target:  5'- cGGGUCUUggGCCUGGGAgguCCGGGGuguugAGCc- -3'
miRNA:   3'- -CCCAGAG--CGGACCUU---GGUCCU-----UCGcu -5'
29017 5' -56.6 NC_006146.1 + 142360 0.7 0.704046
Target:  5'- cGGGUCUUggGCCUGGGAgguCCGGGGuguugAGCc- -3'
miRNA:   3'- -CCCAGAG--CGGACCUU---GGUCCU-----UCGcu -5'
29017 5' -56.6 NC_006146.1 + 150845 0.7 0.713875
Target:  5'- cGGGcgccCUUGCCUGGAGgCAGaGAcugGGCGGc -3'
miRNA:   3'- -CCCa---GAGCGGACCUUgGUC-CU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 125941 0.7 0.713875
Target:  5'- aGGUCUUGC--GGAGCCAGGAgaaggggucuGGCGu -3'
miRNA:   3'- cCCAGAGCGgaCCUUGGUCCU----------UCGCu -5'
29017 5' -56.6 NC_006146.1 + 153923 0.7 0.713875
Target:  5'- cGGGcgccCUUGCCUGGAGgCAGaGAcugGGCGGc -3'
miRNA:   3'- -CCCa---GAGCGGACCUUgGUC-CU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 157001 0.7 0.713875
Target:  5'- cGGGcgccCUUGCCUGGAGgCAGaGAcugGGCGGc -3'
miRNA:   3'- -CCCa---GAGCGGACCUUgGUC-CU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 147767 0.7 0.713875
Target:  5'- cGGGcgccCUUGCCUGGAGgCAGaGAcugGGCGGc -3'
miRNA:   3'- -CCCa---GAGCGGACCUUgGUC-CU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 141612 0.7 0.713875
Target:  5'- cGGGcgccCUUGCCUGGAGgCAGaGAcugGGCGGc -3'
miRNA:   3'- -CCCa---GAGCGGACCUUgGUC-CU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 90054 0.7 0.723636
Target:  5'- aGGUggUGCUggagGGAGCCuAGGAGGCGGu -3'
miRNA:   3'- cCCAgaGCGGa---CCUUGG-UCCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 23967 0.7 0.723636
Target:  5'- cGGGUCggGUgggGGAGCCggagAGGggGCGAa -3'
miRNA:   3'- -CCCAGagCGga-CCUUGG----UCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 50034 0.7 0.727519
Target:  5'- aGGGgccccguacucuaUCGCCguuagcaGGGCCAGGAAGCGGa -3'
miRNA:   3'- -CCCag-----------AGCGGac-----CUUGGUCCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 8413 0.7 0.73139
Target:  5'- aGGGUCUUcauaguccggacCCUgGGGACCAGGAgagcucgggGGCGAg -3'
miRNA:   3'- -CCCAGAGc-----------GGA-CCUUGGUCCU---------UCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.