Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29017 | 5' | -56.6 | NC_006146.1 | + | 170437 | 0.66 | 0.904427 |
Target: 5'- cGGGgcccggCgcgUGCCggGGGACCcGGggGCGu -3' miRNA: 3'- -CCCa-----Ga--GCGGa-CCUUGGuCCuuCGCu -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 147862 | 0.66 | 0.904427 |
Target: 5'- uGGGgagacaaGCUgaggGGGGCCGGGGAGgGAg -3' miRNA: 3'- -CCCagag---CGGa---CCUUGGUCCUUCgCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 150940 | 0.66 | 0.904427 |
Target: 5'- uGGGgagacaaGCUgaggGGGGCCGGGGAGgGAg -3' miRNA: 3'- -CCCagag---CGGa---CCUUGGUCCUUCgCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 169506 | 0.66 | 0.904427 |
Target: 5'- cGGGgcccggCgcgUGCCggGGGACCcGGggGCGu -3' miRNA: 3'- -CCCa-----Ga--GCGGa-CCUUGGuCCuuCGCu -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 154018 | 0.66 | 0.904427 |
Target: 5'- uGGGgagacaaGCUgaggGGGGCCGGGGAGgGAg -3' miRNA: 3'- -CCCagag---CGGa---CCUUGGUCCUUCgCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 168574 | 0.66 | 0.904427 |
Target: 5'- cGGGgcccggCgcgUGCCggGGGACCcGGggGCGu -3' miRNA: 3'- -CCCa-----Ga--GCGGa-CCUUGGuCCuuCGCu -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 157096 | 0.66 | 0.904427 |
Target: 5'- uGGGgagacaaGCUgaggGGGGCCGGGGAGgGAg -3' miRNA: 3'- -CCCagag---CGGa---CCUUGGUCCUUCgCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 44388 | 0.66 | 0.898174 |
Target: 5'- cGGGgggCGUgUGGGGCCGGGcacGGCGc -3' miRNA: 3'- -CCCagaGCGgACCUUGGUCCu--UCGCu -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 15033 | 0.66 | 0.891698 |
Target: 5'- aGGGg--CGCCUGGccagggcccGCCGGGccuGCGAg -3' miRNA: 3'- -CCCagaGCGGACCu--------UGGUCCuu-CGCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 94873 | 0.66 | 0.891038 |
Target: 5'- uGGGUCUCGUggcugaaggaggaCUGGAAggcgucuguCUGGGuGGGCGAg -3' miRNA: 3'- -CCCAGAGCG-------------GACCUU---------GGUCC-UUCGCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 41065 | 0.67 | 0.885002 |
Target: 5'- gGGGcCUCGgggUGGAgggagGCCAGGGacAGCGAg -3' miRNA: 3'- -CCCaGAGCgg-ACCU-----UGGUCCU--UCGCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 53475 | 0.67 | 0.885002 |
Target: 5'- cGGGUgcCUCGUCggucaGGGCCGGGGGuGCGGu -3' miRNA: 3'- -CCCA--GAGCGGac---CUUGGUCCUU-CGCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 141707 | 0.67 | 0.878089 |
Target: 5'- uGGGgagacaGCUgaggGGGGCCGGGGAGgGAg -3' miRNA: 3'- -CCCagag--CGGa---CCUUGGUCCUUCgCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 143603 | 0.67 | 0.875974 |
Target: 5'- uGGGUCUC-CCUuaggcuuggauggcGGAGCCGgcgaugacgguGGAGGUGGc -3' miRNA: 3'- -CCCAGAGcGGA--------------CCUUGGU-----------CCUUCGCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 149758 | 0.67 | 0.875974 |
Target: 5'- uGGGUCUC-CCUuaggcuuggauggcGGAGCCGgcgaugacgguGGAGGUGGc -3' miRNA: 3'- -CCCAGAGcGGA--------------CCUUGGU-----------CCUUCGCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 152836 | 0.67 | 0.875974 |
Target: 5'- uGGGUCUC-CCUuaggcuuggauggcGGAGCCGgcgaugacgguGGAGGUGGc -3' miRNA: 3'- -CCCAGAGcGGA--------------CCUUGGU-----------CCUUCGCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 141399 | 0.67 | 0.870964 |
Target: 5'- aGGGUCaccuaaagUCcccccuggacggGCCUGGGgugGCCGGGGAGgGGu -3' miRNA: 3'- -CCCAG--------AG------------CGGACCU---UGGUCCUUCgCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 144477 | 0.67 | 0.870964 |
Target: 5'- aGGGUCaccuaaagUCcccccuggacggGCCUGGGgugGCCGGGGAGgGGu -3' miRNA: 3'- -CCCAG--------AG------------CGGACCU---UGGUCCUUCgCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 147555 | 0.67 | 0.870964 |
Target: 5'- aGGGUCaccuaaagUCcccccuggacggGCCUGGGgugGCCGGGGAGgGGu -3' miRNA: 3'- -CCCAG--------AG------------CGGACCU---UGGUCCUUCgCU- -5' |
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29017 | 5' | -56.6 | NC_006146.1 | + | 150633 | 0.67 | 0.870964 |
Target: 5'- aGGGUCaccuaaagUCcccccuggacggGCCUGGGgugGCCGGGGAGgGGu -3' miRNA: 3'- -CCCAG--------AG------------CGGACCU---UGGUCCUUCgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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