miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 5' -56.6 NC_006146.1 + 8413 0.7 0.73139
Target:  5'- aGGGUCUUcauaguccggacCCUgGGGACCAGGAgagcucgggGGCGAg -3'
miRNA:   3'- -CCCAGAGc-----------GGA-CCUUGGUCCU---------UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 12905 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 14836 0.72 0.603907
Target:  5'- cGGUCUCggGCCcGGGGCCgcGGGAGGcCGAg -3'
miRNA:   3'- cCCAGAG--CGGaCCUUGG--UCCUUC-GCU- -5'
29017 5' -56.6 NC_006146.1 + 15033 0.66 0.891698
Target:  5'- aGGGg--CGCCUGGccagggcccGCCGGGccuGCGAg -3'
miRNA:   3'- -CCCagaGCGGACCu--------UGGUCCuu-CGCU- -5'
29017 5' -56.6 NC_006146.1 + 15982 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 19060 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 21948 0.68 0.832346
Target:  5'- aGGcCcgCGCCauUGGGGCCAGcAAGCGAg -3'
miRNA:   3'- cCCaGa-GCGG--ACCUUGGUCcUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 22138 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 23967 0.7 0.723636
Target:  5'- cGGGUCggGUgggGGAGCCggagAGGggGCGAa -3'
miRNA:   3'- -CCCAGagCGga-CCUUGG----UCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 24091 0.77 0.342199
Target:  5'- cGGcCUCGCCUGGGACgCGGGucgaGGGCGGc -3'
miRNA:   3'- cCCaGAGCGGACCUUG-GUCC----UUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 25216 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 28294 0.69 0.780296
Target:  5'- gGGGUCUgugguggugaGCCUGGuGCCucuGGAGGCc- -3'
miRNA:   3'- -CCCAGAg---------CGGACCuUGGu--CCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 32882 0.69 0.789341
Target:  5'- aGGUCccUGCCUGGcACCAGGGuccGGCu- -3'
miRNA:   3'- cCCAGa-GCGGACCuUGGUCCU---UCGcu -5'
29017 5' -56.6 NC_006146.1 + 37531 0.69 0.761831
Target:  5'- uGGUCUggUGUgUGGGAgCAGGAGGCa- -3'
miRNA:   3'- cCCAGA--GCGgACCUUgGUCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 40895 0.69 0.752427
Target:  5'- gGGGcCUCGUCUGcGAuCCGGGc-GCGAu -3'
miRNA:   3'- -CCCaGAGCGGAC-CUuGGUCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 41065 0.67 0.885002
Target:  5'- gGGGcCUCGgggUGGAgggagGCCAGGGacAGCGAg -3'
miRNA:   3'- -CCCaGAGCgg-ACCU-----UGGUCCU--UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 44388 0.66 0.898174
Target:  5'- cGGGgggCGUgUGGGGCCGGGcacGGCGc -3'
miRNA:   3'- -CCCagaGCGgACCUUGGUCCu--UCGCu -5'
29017 5' -56.6 NC_006146.1 + 47680 0.66 0.921818
Target:  5'- aGGGUCUCGUggaUGGAggACUuGGgcGUGGa -3'
miRNA:   3'- -CCCAGAGCGg--ACCU--UGGuCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 48705 0.66 0.91625
Target:  5'- gGGGaCUaCGUCUGGGAgUgAGGAGGCa- -3'
miRNA:   3'- -CCCaGA-GCGGACCUU-GgUCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 50034 0.7 0.727519
Target:  5'- aGGGgccccguacucuaUCGCCguuagcaGGGCCAGGAAGCGGa -3'
miRNA:   3'- -CCCag-----------AGCGGac-----CUUGGUCCUUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.