miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 5' -56.6 NC_006146.1 + 53475 0.67 0.885002
Target:  5'- cGGGUgcCUCGUCggucaGGGCCGGGGGuGCGGu -3'
miRNA:   3'- -CCCA--GAGCGGac---CUUGGUCCUU-CGCU- -5'
29017 5' -56.6 NC_006146.1 + 54286 0.99 0.013607
Target:  5'- aGGGUCUCGCCUGaGACCAGGAAGCGAc -3'
miRNA:   3'- -CCCAGAGCGGACcUUGGUCCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 55652 0.67 0.863632
Target:  5'- gGGGUgcagcaGCC-GGAGCCAGGcGGCGu -3'
miRNA:   3'- -CCCAgag---CGGaCCUUGGUCCuUCGCu -5'
29017 5' -56.6 NC_006146.1 + 56207 0.66 0.908669
Target:  5'- cGGGUCUCGC--GGAcgagccgcgaGCCGuccagcggguccgcGGggGCGGa -3'
miRNA:   3'- -CCCAGAGCGgaCCU----------UGGU--------------CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 63833 0.72 0.583883
Target:  5'- aGGUCUUGCCgUGGcGCCGGGGAaUGAg -3'
miRNA:   3'- cCCAGAGCGG-ACCuUGGUCCUUcGCU- -5'
29017 5' -56.6 NC_006146.1 + 64233 0.66 0.910453
Target:  5'- --aUCUgCGCCUGG-GCCGGGgcGgGAg -3'
miRNA:   3'- cccAGA-GCGGACCuUGGUCCuuCgCU- -5'
29017 5' -56.6 NC_006146.1 + 66782 0.69 0.798248
Target:  5'- gGGGUg-CGaCCUGGAcACCGGGcccAGGCGGc -3'
miRNA:   3'- -CCCAgaGC-GGACCU-UGGUCC---UUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 70822 0.67 0.856098
Target:  5'- -aGUCUCuauGUCUGGGGCCAaGGGccaAGCGGg -3'
miRNA:   3'- ccCAGAG---CGGACCUUGGU-CCU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 71240 0.68 0.815619
Target:  5'- uGGUCaacuCCUGGGGCCuggcGGGggGCGGc -3'
miRNA:   3'- cCCAGagc-GGACCUUGG----UCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 76384 0.66 0.910453
Target:  5'- aGGG-CgCGCCgggggaGGGACCGGGGgcgccgacGGCGGc -3'
miRNA:   3'- -CCCaGaGCGGa-----CCUUGGUCCU--------UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 84693 0.68 0.815619
Target:  5'- uGGGUCaaGUCUGGGACUuGGAgcAGCuGAg -3'
miRNA:   3'- -CCCAGagCGGACCUUGGuCCU--UCG-CU- -5'
29017 5' -56.6 NC_006146.1 + 89381 0.66 0.921818
Target:  5'- aGGUCUCGUggUGGGcACCgaGGGGAGCa- -3'
miRNA:   3'- cCCAGAGCGg-ACCU-UGG--UCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 89974 0.66 0.91625
Target:  5'- uGGGcCUgG-CUGG-GCCGGGAGGCu- -3'
miRNA:   3'- -CCCaGAgCgGACCuUGGUCCUUCGcu -5'
29017 5' -56.6 NC_006146.1 + 90054 0.7 0.723636
Target:  5'- aGGUggUGCUggagGGAGCCuAGGAGGCGGu -3'
miRNA:   3'- cCCAgaGCGGa---CCUUGG-UCCUUCGCU- -5'
29017 5' -56.6 NC_006146.1 + 92001 0.7 0.733321
Target:  5'- cGGGcC-CgGCCUGGGGCUgcugcuGGGggGCGGg -3'
miRNA:   3'- -CCCaGaG-CGGACCUUGG------UCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 92061 0.69 0.761831
Target:  5'- cGGGcC-CgGCCUGGGGCUgcugcuGGGggGCGGc -3'
miRNA:   3'- -CCCaGaG-CGGACCUUGG------UCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 92120 0.7 0.733321
Target:  5'- cGGGcC-CgGCCUGGGGCUgcugcuGGGggGCGGg -3'
miRNA:   3'- -CCCaGaG-CGGACCUUGG------UCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 92180 0.7 0.733321
Target:  5'- cGGGcC-CgGCCUGGGGCUgcugcuGGGggGCGGg -3'
miRNA:   3'- -CCCaGaG-CGGACCUUGG------UCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 92270 0.7 0.733321
Target:  5'- cGGGcC-CgGCCUGGGGCUgcugcuGGGggGCGGg -3'
miRNA:   3'- -CCCaGaG-CGGACCUUGG------UCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 94639 0.71 0.674243
Target:  5'- cGGGUCcaugauggcCGCCcugGGGACCAcGAAGCGGu -3'
miRNA:   3'- -CCCAGa--------GCGGa--CCUUGGUcCUUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.