miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29017 5' -56.6 NC_006146.1 + 170437 0.66 0.904427
Target:  5'- cGGGgcccggCgcgUGCCggGGGACCcGGggGCGu -3'
miRNA:   3'- -CCCa-----Ga--GCGGa-CCUUGGuCCuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 170394 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 170182 0.66 0.91625
Target:  5'- aGGGggCUC-CCgagggcGGGGCCGGGGccuGGCGGg -3'
miRNA:   3'- -CCCa-GAGcGGa-----CCUUGGUCCU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 170100 0.69 0.780296
Target:  5'- gGGGcCggCGCCgcagggGGGGCCGGcGggGCGu -3'
miRNA:   3'- -CCCaGa-GCGGa-----CCUUGGUC-CuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 169985 0.66 0.910453
Target:  5'- cGG-CgcgCGCCcGGGGucCCGGGggGCGGc -3'
miRNA:   3'- cCCaGa--GCGGaCCUU--GGUCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 169506 0.66 0.904427
Target:  5'- cGGGgcccggCgcgUGCCggGGGACCcGGggGCGu -3'
miRNA:   3'- -CCCa-----Ga--GCGGa-CCUUGGuCCuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 169463 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 169251 0.66 0.91625
Target:  5'- aGGGggCUC-CCgagggcGGGGCCGGGGccuGGCGGg -3'
miRNA:   3'- -CCCa-GAGcGGa-----CCUUGGUCCU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 169168 0.68 0.848368
Target:  5'- gGGGcCggCGCCUgcagggGGGGCCGGcGggGCGu -3'
miRNA:   3'- -CCCaGa-GCGGA------CCUUGGUC-CuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 169053 0.66 0.910453
Target:  5'- cGG-CgcgCGCCcGGGGucCCGGGggGCGGc -3'
miRNA:   3'- cCCaGa--GCGGaCCUU--GGUCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 168574 0.66 0.904427
Target:  5'- cGGGgcccggCgcgUGCCggGGGACCcGGggGCGu -3'
miRNA:   3'- -CCCa-----Ga--GCGGa-CCUUGGuCCuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 168531 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 168319 0.66 0.91625
Target:  5'- aGGGggCUC-CCgagggcGGGGCCGGGGccuGGCGGg -3'
miRNA:   3'- -CCCa-GAGcGGa-----CCUUGGUCCU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 168236 0.68 0.848368
Target:  5'- gGGGcCggCGCCUgcagggGGGGCCGGcGggGCGu -3'
miRNA:   3'- -CCCaGa-GCGGA------CCUUGGUC-CuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 168121 0.66 0.910453
Target:  5'- cGG-CgcgCGCCcGGGGucCCGGGggGCGGc -3'
miRNA:   3'- cCCaGa--GCGGaCCUU--GGUCCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 167642 0.66 0.904427
Target:  5'- cGGGgcccggCgcgUGCCgGGGGCCcGGggGCGu -3'
miRNA:   3'- -CCCa-----Ga--GCGGaCCUUGGuCCuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 167599 0.71 0.654193
Target:  5'- cGGGcCUCcCCUgGGGGCCucGGggGCGGa -3'
miRNA:   3'- -CCCaGAGcGGA-CCUUGGu-CCuuCGCU- -5'
29017 5' -56.6 NC_006146.1 + 167387 0.66 0.91625
Target:  5'- aGGGggCUC-CCgagggcGGGGCCGGGGccuGGCGGg -3'
miRNA:   3'- -CCCa-GAGcGGa-----CCUUGGUCCU---UCGCU- -5'
29017 5' -56.6 NC_006146.1 + 167304 0.68 0.848368
Target:  5'- gGGGcCggCGCCUgcagggGGGGCCGGcGggGCGu -3'
miRNA:   3'- -CCCaGa-GCGGA------CCUUGGUC-CuuCGCu -5'
29017 5' -56.6 NC_006146.1 + 167189 0.66 0.910453
Target:  5'- cGG-CgcgCGCCcGGGGucCCGGGggGCGGc -3'
miRNA:   3'- cCCaGa--GCGGaCCUU--GGUCCuuCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.